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Report for CCDS39469.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39469.1 Public Mus musculus 6 Pip 23 108 98 CCDS HistoryNCBI Gene:18716Re-query CCDS DB by CCDS ID:39469.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39469.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075351.9 ENSMUSP00000074818.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075351.9Link to Ensembl Protein Viewer:ENSMUSP00000074818.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000075351Re-query CCDS DB by Protein ID:ENSMUSP00000074818
Original member Current member NCBI NM_008843.4 NP_032869.2 Accepted alive Link to Nucleotide Sequence:NM_008843.4Link to Protein Sequence:NP_032869.2Re-query CCDS DB by Nucleotide ID:NM_008843Re-query CCDS DB by Protein ID:NP_032869Link to BLAST:NP_032869.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032869.2 146 P02816 146 100% 0 0

Chromosomal Locations for CCDS 39469.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41847580 41847668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41849812 41849923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41851435 41851549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41851839 41851963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGCAGGGTCTCTCATTCACATTCAGTGCTGTGACACTCTTCTTGGTCCTATGTCTGCAGCTGGGGATCA
TTGAAAGCCAGGATGATGAAAATGTCCGAAAGCCACTTTTGATTGAAATAGATGTTCCATCAACAGCACA
GGAAAATCAGGAGATCACTGTGCAAGTTACAGTTGAAACACAATATAGAGAATGTATGGTGATCAAAGCT
TACCTTGTAAGTAATGAACCAATGGAAGGTGCCTTCAACTATGTACAAACCCGCTGCCTCTGTAATGATC
ATCCTATTAGATTTTTCTGGGATATAATAATCACAAGAACTGTAACATTTGCAACAGTGATTGATATTGT
TCGAGAAAAGAATATCTGTCCTAATGATATGGCAGTGGTGCCCATCACAGCAAACCGGTACTATACTTAT
AATACTGTGCGAATGAATTAA

Translation (146 aa):
MQGLSFTFSAVTLFLVLCLQLGIIESQDDENVRKPLLIEIDVPSTAQENQEITVQVTVETQYRECMVIKA
YLVSNEPMEGAFNYVQTRCLCNDHPIRFFWDIIITRTVTFATVIDIVREKNICPNDMAVVPITANRYYTY
NTVRMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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