NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46203.1 Public Homo sapiens 19 ZSCAN5B 24 110 108 CCDS HistoryNCBI Gene:342933Re-query CCDS DB by CCDS ID:46203.1Re-query CCDS DB by GeneID:342933See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Inferred exon combination

Sequence IDs included in CCDS 46203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000586855.7 ENSP00000466072.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000586855.7Link to Ensembl Protein Viewer:ENSP00000466072.2Re-query CCDS DB by Nucleotide ID:ENST00000586855Re-query CCDS DB by Protein ID:ENSP00000466072
Original member Current member NCBI NM_001080456.5 NP_001073925.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080456.5Link to Protein Sequence:NP_001073925.2Re-query CCDS DB by Nucleotide ID:NM_001080456Re-query CCDS DB by Protein ID:NP_001073925Link to BLAST:NP_001073925.2
Original member Current member NCBI NM_001385638.1 NP_001372567.1 Accepted alive Link to Nucleotide Sequence:NM_001385638.1Link to Protein Sequence:NP_001372567.1Re-query CCDS DB by Nucleotide ID:NM_001385638Re-query CCDS DB by Protein ID:NP_001372567Link to BLAST:NP_001372567.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073925.2 495 A6NJL1 495 100% 0 0
NP_001372567.1 495 A6NJL1 495 100% 0 0

Chromosomal Locations for CCDS 46203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 56189827 56190575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56190837 56190987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56191850 56192053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 56192669 56193052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGGCTGCAAATTGGACACTCTCATGGGGTCAGGGAGGACCCTGCAACAGCCCTGGGTCAGACACTCCAC
GGTCTGTGGCGTCCCCAGAAACTCAACTTGGAAATCACGACAGGAACCCTGAGACTTGGCACATGAATTT
CAGGATGTTCAGCTGCCCAGAGGAGTCGGACCCCATCCAGGCTCTGAGGAAACTCACTGAGCTGTGCCAT
CTGTGGCTGAGGCCCGACCTCCACACCAAAGAGCAGATCCTGGACATGCTGGTGATGGAGCAGTTCATGA
TCTCCATGCCCCAGGAGCTCCAGGTCTTAGTCAAGGTGAACGGTGTGCAGAGCTGCAAAGACCTGGAGGA
CCTGCTACGAAATAACAGAAGACCCAAGAAATGGTCTATAGTCAACTTGCTCGGCAAAGAATATCTTATG
CTGAACTCAGATGTCGAGATGGCTGAAGCCCCCGCCAGTGTCAGAGATGATCCGAGAGACGTGTCCAGCC
AGTGGGCCTCCTCTGTGAACCAGATGCATCCGGGGACAGGCCAGGCCCGCCGAGAGCAGCAGATCCTGCC
CAGGGTCGCTGCACTGTCCAGGAGGCAGGGAGAGGACTTTCTGCTACACAAGAGTATTGACGTAACAGGT
GACCCAAACTCTCCGAGACCCAAGCAGACCTTGGAGAAGGATCTGAAGGAAAACAGGGAAGAGAACCCAG
GACTGTCATCCCCAGAGCCTCAGCTTCCAAAGAGTCCCAATCTGGTGAGAGCAAAGGAGGGGAAGGAACC
CCAGAAAAGAGCCTCTGTGGAAAATGTGGATGCTGACACACCTTCTGCCTGCGTTGTGGAGAGAGAAGCT
TTGACTCACAGCGGGAACAGAGGAGATGCTCTGAATCTGAGCAGTCCCAAAAGAAGCAAACCAGATGCCT
CCTCCATTTCCCAAGAAGAGCCTCAAGGAGAAGCCACACCTGTGGGCAACAGAGAATCCCCAGGACAAGC
TGAGATCAATCCAGTTCATTCCCCAGGCCCTGCGGGCCCGGTCAGTCACCCAGATGGCCAAGAAGCCAAG
GCCCTGCCGCCCTTTGCATGTGACGTGTGCAATAAATCATTTAAGTATTTTTCCCAGCTAAGCATCCACA
GGAGGTCACACACAGGAGACAGACCCTTTCAATGTGATCTCTGTCGGAAGCGCTTCTTGCAGCCCTCAGA
CCTCCGAGTTCACCAGCGAGTCCACACTGGCGAGAGGCCCTACATGTGTGACGTCTGCCAAAAGCGGTTC
GCCCACGAGTCCACCTTACAGGGCCACAAGAGGATCCACACCGGGGAGAGGCCGTTTAAATGTAAATACT
GCAGCAAAGTTTTCAGCCACAAGGGGAACCTGAACGTTCACCAGCGCACCCACTCCGGAGAGAAGCCCTA
CAAATGTCCCACCTGTCAAAAGGCCTTCCGTCAGCTGGGGACATTCAAGCGTCACCTGAAAACACACCGG
GAAACCACCTCCCAGTGA

Translation (495 aa):
MAANWTLSWGQGGPCNSPGSDTPRSVASPETQLGNHDRNPETWHMNFRMFSCPEESDPIQALRKLTELCH
LWLRPDLHTKEQILDMLVMEQFMISMPQELQVLVKVNGVQSCKDLEDLLRNNRRPKKWSIVNLLGKEYLM
LNSDVEMAEAPASVRDDPRDVSSQWASSVNQMHPGTGQARREQQILPRVAALSRRQGEDFLLHKSIDVTG
DPNSPRPKQTLEKDLKENREENPGLSSPEPQLPKSPNLVRAKEGKEPQKRASVENVDADTPSACVVEREA
LTHSGNRGDALNLSSPKRSKPDASSISQEEPQGEATPVGNRESPGQAEINPVHSPGPAGPVSHPDGQEAK
ALPPFACDVCNKSFKYFSQLSIHRRSHTGDRPFQCDLCRKRFLQPSDLRVHQRVHTGERPYMCDVCQKRF
AHESTLQGHKRIHTGERPFKCKYCSKVFSHKGNLNVHQRTHSGEKPYKCPTCQKAFRQLGTFKRHLKTHR
ETTSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH