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Report for CCDS45805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45805.1 Public Homo sapiens 17 RBFOX3 24 110 108 CCDS HistoryNCBI Gene:146713Re-query CCDS DB by CCDS ID:45805.1Re-query CCDS DB by GeneID:146713See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45805.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000580155.5 ENSP00000463653.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000580155.5Link to Ensembl Protein Viewer:ENSP00000463653.1Re-query CCDS DB by Nucleotide ID:ENST00000580155Re-query CCDS DB by Protein ID:ENSP00000463653
Original member Current member NCBI NM_001082575.3 NP_001076044.1 Accepted alive Link to Nucleotide Sequence:NM_001082575.3Link to Protein Sequence:NP_001076044.1Re-query CCDS DB by Nucleotide ID:NM_001082575Re-query CCDS DB by Protein ID:NP_001076044Link to BLAST:NP_001076044.1
Original member Current member NCBI NM_001350453.2 NP_001337382.1 Accepted alive Link to Nucleotide Sequence:NM_001350453.2Link to Protein Sequence:NP_001337382.1Re-query CCDS DB by Nucleotide ID:NM_001350453Re-query CCDS DB by Protein ID:NP_001337382Link to BLAST:NP_001337382.1
Original member Current member NCBI NM_001385828.1 NP_001372757.1 Accepted alive Link to Nucleotide Sequence:NM_001385828.1Link to Protein Sequence:NP_001372757.1Re-query CCDS DB by Nucleotide ID:NM_001385828Re-query CCDS DB by Protein ID:NP_001372757Link to BLAST:NP_001372757.1
Original member Current member NCBI NM_001385829.1 NP_001372758.1 Accepted alive Link to Nucleotide Sequence:NM_001385829.1Link to Protein Sequence:NP_001372758.1Re-query CCDS DB by Nucleotide ID:NM_001385829Re-query CCDS DB by Protein ID:NP_001372758Link to BLAST:NP_001372758.1
Original member Current member NCBI NM_001385830.1 NP_001372759.1 Accepted alive Link to Nucleotide Sequence:NM_001385830.1Link to Protein Sequence:NP_001372759.1Re-query CCDS DB by Nucleotide ID:NM_001385830Re-query CCDS DB by Protein ID:NP_001372759Link to BLAST:NP_001372759.1
Original member Current member NCBI NM_001385831.1 NP_001372760.1 Accepted alive Link to Nucleotide Sequence:NM_001385831.1Link to Protein Sequence:NP_001372760.1Re-query CCDS DB by Nucleotide ID:NM_001385831Re-query CCDS DB by Protein ID:NP_001372760Link to BLAST:NP_001372760.1
Original member Current member NCBI NM_001385832.1 NP_001372761.1 Accepted alive Link to Nucleotide Sequence:NM_001385832.1Link to Protein Sequence:NP_001372761.1Re-query CCDS DB by Nucleotide ID:NM_001385832Re-query CCDS DB by Protein ID:NP_001372761Link to BLAST:NP_001372761.1
Original member Current member NCBI NM_001385833.1 NP_001372762.1 Accepted alive Link to Nucleotide Sequence:NM_001385833.1Link to Protein Sequence:NP_001372762.1Re-query CCDS DB by Nucleotide ID:NM_001385833Re-query CCDS DB by Protein ID:NP_001372762Link to BLAST:NP_001372762.1
Original member Current member NCBI NM_001385834.1 NP_001372763.1 Accepted alive Link to Nucleotide Sequence:NM_001385834.1Link to Protein Sequence:NP_001372763.1Re-query CCDS DB by Nucleotide ID:NM_001385834Re-query CCDS DB by Protein ID:NP_001372763Link to BLAST:NP_001372763.1
Original member Current member NCBI NM_001385835.1 NP_001372764.1 Accepted alive Link to Nucleotide Sequence:NM_001385835.1Link to Protein Sequence:NP_001372764.1Re-query CCDS DB by Nucleotide ID:NM_001385835Re-query CCDS DB by Protein ID:NP_001372764Link to BLAST:NP_001372764.1
Original member Current member NCBI NM_001385836.1 NP_001372765.1 Accepted alive Link to Nucleotide Sequence:NM_001385836.1Link to Protein Sequence:NP_001372765.1Re-query CCDS DB by Nucleotide ID:NM_001385836Re-query CCDS DB by Protein ID:NP_001372765Link to BLAST:NP_001372765.1
Original member Current member NCBI NM_001385837.1 NP_001372766.1 Accepted alive Link to Nucleotide Sequence:NM_001385837.1Link to Protein Sequence:NP_001372766.1Re-query CCDS DB by Nucleotide ID:NM_001385837Re-query CCDS DB by Protein ID:NP_001372766Link to BLAST:NP_001372766.1
Original member Current member NCBI NM_001385838.1 NP_001372767.1 Accepted alive Link to Nucleotide Sequence:NM_001385838.1Link to Protein Sequence:NP_001372767.1Re-query CCDS DB by Nucleotide ID:NM_001385838Re-query CCDS DB by Protein ID:NP_001372767Link to BLAST:NP_001372767.1
Original member Current member NCBI NM_001385839.1 NP_001372768.1 Accepted alive Link to Nucleotide Sequence:NM_001385839.1Link to Protein Sequence:NP_001372768.1Re-query CCDS DB by Nucleotide ID:NM_001385839Re-query CCDS DB by Protein ID:NP_001372768Link to BLAST:NP_001372768.1
Original member Current member NCBI NM_001385840.1 NP_001372769.1 Accepted alive Link to Nucleotide Sequence:NM_001385840.1Link to Protein Sequence:NP_001372769.1Re-query CCDS DB by Nucleotide ID:NM_001385840Re-query CCDS DB by Protein ID:NP_001372769Link to BLAST:NP_001372769.1
Original member Current member NCBI NM_001385841.1 NP_001372770.1 Accepted alive Link to Nucleotide Sequence:NM_001385841.1Link to Protein Sequence:NP_001372770.1Re-query CCDS DB by Nucleotide ID:NM_001385841Re-query CCDS DB by Protein ID:NP_001372770Link to BLAST:NP_001372770.1
Original member Current member NCBI NM_001385842.1 NP_001372771.1 Accepted alive Link to Nucleotide Sequence:NM_001385842.1Link to Protein Sequence:NP_001372771.1Re-query CCDS DB by Nucleotide ID:NM_001385842Re-query CCDS DB by Protein ID:NP_001372771Link to BLAST:NP_001372771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076044.1 312 A6NFN3-1 312 100% 0 0
NP_001337382.1 312 A6NFN3-1 312 100% 0 0
NP_001372757.1 312 A6NFN3-1 312 100% 0 0
NP_001372758.1 312 A6NFN3-1 312 100% 0 0
NP_001372759.1 312 A6NFN3-1 312 100% 0 0
NP_001372760.1 312 A6NFN3-1 312 100% 0 0
NP_001372761.1 312 A6NFN3-1 312 100% 0 0
NP_001372762.1 312 A6NFN3-1 312 100% 0 0
NP_001372763.1 312 A6NFN3-1 312 100% 0 0
NP_001372764.1 312 A6NFN3-1 312 100% 0 0
NP_001372765.1 312 A6NFN3-1 312 100% 0 0
NP_001372766.1 312 A6NFN3-1 312 100% 0 0
NP_001372767.1 312 A6NFN3-1 312 100% 0 0
NP_001372768.1 312 A6NFN3-1 312 100% 0 0
NP_001372769.1 312 A6NFN3-1 312 100% 0 0
NP_001372770.1 312 A6NFN3-1 312 100% 0 0
NP_001372771.1 312 A6NFN3-1 312 100% 0 0

Chromosomal Locations for CCDS 45805.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 79090883 79090885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79094451 79094529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79095513 79095574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79096653 79096692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79097292 79097424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79097692 79097745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79101584 79101644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79103162 79103254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79104073 79104126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79106651 79106788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 79115494 79115715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGCCCAGCCCTACCCCCCCGCCCAGTACCCCCCTCCGCCACAGAACGGCATCCCTGCCGAGTACGCCC
CGCCCCCACCGCACCCCACGCAGGACTACTCCGGCCAGACCCCGGTCCCCACAGAGCATGGCATGACCCT
GTACACACCAGCACAGACCCACCCCGAGCAGCCAGGCTCCGAGGCCAGCACACAGCCCATCGCCGGGACC
CAGACAGTGCCGCAGACAGACGAGGCGGCACAGACGGACAGCCAGCCGCTCCACCCCTCCGACCCTACAG
AGAAGCAGCAGCCCAAGCGGCTACACGTCTCCAACATCCCCTTCCGGTTCAGGGACCCCGACTTGCGGCA
AATGTTCGGGCAATTCGGAAAAATTTTAGACGTGGAGATCATTTTTAACGAGCGGGGCTCCAAGGGTTTT
GGGTTTGTAACTTTTGAAACTAGCTCAGATGCTGACCGAGCCCGGGAGAAGCTGAATGGGACGATCGTAG
AGGGACGGAAAATTGAGGTCAATAATGCCACGGCCCGAGTGATGACCAACAAGAAGACGGGGAACCCCTA
CACCAACGGCTGGAAGCTAAATCCAGTGGTCGGCGCAGTCTACGGGCCTGAATTCTATGCAGTGACGGGG
TTCCCCTACCCCACCACCGGCACAGCCGTTGCCTACCGGGGCGCACATCTTCGGGGCCGGGGCCGGGCCG
TGTATAATACATTTCGGGCTGCGCCACCCCCACCCCCCATCCCGACTTACGGAGCGGTCGTGTATCAGGA
TGGATTTTATGGTGCTGAGATTTATGGAGGCTACGCAGCCTACAGATACGCTCAGCCCGCTGCAGCGGCG
GCAGCCTACAGCGACAGTTACGGCAGAGTCTACGCAGCTGCCGACCCGTACCATCACACCATCGGGCCCG
CGGCGACCTACAGCATTGGAACCATGTGA

Translation (312 aa):
MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGSEASTQPIAGT
QTVPQTDEAAQTDSQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF
GFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARVMTNKKTGNPYTNGWKLNPVVGAVYGPEFYAVTG
FPYPTTGTAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYGAEIYGGYAAYRYAQPAAAA
AAYSDSYGRVYAAADPYHHTIGPAATYSIGTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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