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Report for CCDS23918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23918.1 Public Mus musculus 10 Ipmk 23 108 98 CCDS HistoryNCBI Gene:69718Re-query CCDS DB by CCDS ID:23918.1Re-query CCDS DB by GeneID:69718See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079252.12 ENSMUSP00000078240.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079252.12Link to Ensembl Protein Viewer:ENSMUSP00000078240.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000079252Re-query CCDS DB by Protein ID:ENSMUSP00000078240
Original member NCBI NM_027184.2 NP_081460.1 Updated not alive Link to Nucleotide Sequence:NM_027184.2Link to Protein Sequence:NP_081460.1Re-query CCDS DB by Nucleotide ID:NM_027184Re-query CCDS DB by Protein ID:NP_081460
Current member NCBI NM_027184.3 NP_081460.1 Accepted alive Link to Nucleotide Sequence:NM_027184.3Link to Protein Sequence:NP_081460.1Re-query CCDS DB by Nucleotide ID:NM_027184Re-query CCDS DB by Protein ID:NP_081460Link to BLAST:NP_081460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081460.1 396 Q7TT16-1 396 100% 0 0

Chromosomal Locations for CCDS 23918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71347952 71348090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71363450 71363535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71366009 71366105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71372708 71372880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71376705 71376786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71381205 71381818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGCCGCCGAGCCCCCAGCGCTGCGCCTGCGGCCGCCGGGAAGCACCGGAGACAGCCCGCCGGTGCCGC
GCCTGCTCGGAGGCTGCGTGCCGCTGTCGCATCAGGTGGCTGGCCACATGTACGGCAAGGACAAAGTGGG
CATACTCCAGCACCCAGATGGTACAGTTCTGAAACAGCTACAGCCACCGCCACGGGGCCCAAGAGAGCTG
GAATTTTATACCATGGTTTACGCTGCTGACTGTGCCGATGCTGTTCTCCTGGAGCTGCGAAAACACCTGC
CCAAATACTACGGCGTCTGGTCCCCTCCCACCGCACCAAACGATGTGTACCTAAAACTGGAAGATGTGAC
TCATAAGTTTAACAAACCCTGTATAATGGACGTGAAGATTGGGCGGAAGAGCTACGACCCCTTTGCGTCA
TCAGAGAAGATTCAGCAGCAGGTCAGCAAGTACCCTCTGATGGAGGAGATCGGGTTCCTGGTGCTCGGCA
TGAGGGTTTATCATCTTCACTCTGACAGCTACGAGACACAAAACCAGCACTATGGAAGAGGCCTAACGAA
AGAGACCCTGAAGGAAGGCGTCTCCAAGTTTTTCCACAATGGCTTCTGTTTAAGAAAAGATGCGATTGCC
GCCAGTATTCAGAAGGTAGAGAAGATTCTCCAGTGGTTTGAAAATCAGAAGCAGCTTAACTTTTACGCAA
GTTCTTTACTGTTTGTTTATGAAGGTTCATCTCAGCCAGCTACTACAAAAGCAAACGATAGAACTTTGGC
GGGGAGGTTTCTCTCCAAAGGACCCCTGACGGATGCGGACGGCCTGGAGTGCAATAACAACTTCCACCTG
TTCGGCGCCCCGCCCAACGGGATGTCGGTGGGCAAGAGCTTATCGAAGGCGTACTCGAGGCACAGAAAGC
TGTATGCAAAAAAGCACCAGAGTCAGACTTCCCTGAAAGTCGAAACGCTGGAGCAAGACAACGGGTGGAG
AAGCATGTCCCAGGAACACTTAAACGGAAACGTGCTTGCCCAACTGGAAAAGGTGTTCTACCACCTTCCC
GCGGGTCGTCCGGAGATCCCGGAAGCGGAAGTACGGATGATAGACTTTGCTCACGTGTTCCCTAGCAACA
CAGTCGATGAGGGGTATGTTTACGGTCTGAAGCATCTAATTGCCGTGCTTCGGAGTATTTTAGACAGTTG
A

Translation (396 aa):
MAAEPPALRLRPPGSTGDSPPVPRLLGGCVPLSHQVAGHMYGKDKVGILQHPDGTVLKQLQPPPRGPREL
EFYTMVYAADCADAVLLELRKHLPKYYGVWSPPTAPNDVYLKLEDVTHKFNKPCIMDVKIGRKSYDPFAS
SEKIQQQVSKYPLMEEIGFLVLGMRVYHLHSDSYETQNQHYGRGLTKETLKEGVSKFFHNGFCLRKDAIA
ASIQKVEKILQWFENQKQLNFYASSLLFVYEGSSQPATTKANDRTLAGRFLSKGPLTDADGLECNNNFHL
FGAPPNGMSVGKSLSKAYSRHRKLYAKKHQSQTSLKVETLEQDNGWRSMSQEHLNGNVLAQLEKVFYHLP
AGRPEIPEAEVRMIDFAHVFPSNTVDEGYVYGLKHLIAVLRSILDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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