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Report for CCDS10479.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10479.3 Public Homo sapiens 16 ZG16B 24 110 108 CCDS HistoryNCBI Gene:124220Re-query CCDS DB by CCDS ID:10479.3Re-query CCDS DB by GeneID:124220See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10479.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382280.8 ENSP00000371715.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382280.8Link to Ensembl Protein Viewer:ENSP00000371715.4Re-query CCDS DB by Nucleotide ID:ENST00000382280Re-query CCDS DB by Protein ID:ENSP00000371715
Original member Current member EBI ENST00000572863.2 ENSP00000461740.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572863.2Link to Ensembl Protein Viewer:ENSP00000461740.2Re-query CCDS DB by Nucleotide ID:ENST00000572863Re-query CCDS DB by Protein ID:ENSP00000461740
Original member Current member NCBI NM_145252.3 NP_660295.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145252.3Link to Protein Sequence:NP_660295.3Re-query CCDS DB by Nucleotide ID:NM_145252Re-query CCDS DB by Protein ID:NP_660295Link to BLAST:NP_660295.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660295.3 172 Q96DA0 172 100% 0 0

Chromosomal Locations for CCDS 10479.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2830442 2830493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2830694 2830796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2831796 2832159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (519 nt):
ATGCTGCTGCTGCTCACGCTTGCCCTCCTGGGGGGCCCCACCTGGGCAGGGAAGATGTATGGCCCTGGAG
GAGGCAAGTATTTCAGCACCACTGAAGACTACGACCATGAAATCACAGGGCTGCGGGTGTCTGTAGGTCT
TCTCCTGGTGAAAAGTGTCCAGGTGAAACTTGGAGACTCCTGGGACGTGAAACTGGGAGCCTTAGGTGGG
AATACCCAGGAAGTCACCCTGCAGCCAGGCGAATACATCACAAAAGTCTTTGTCGCCTTCCAAGCTTTCC
TCCGGGGTATGGTCATGTACACCAGCAAGGACCGCTATTTCTATTTTGGGAAGCTTGATGGCCAGATCTC
CTCTGCCTACCCCAGCCAAGAGGGGCAGGTGCTGGTGGGCATCTATGGCCAGTATCAACTCCTTGGCATC
AAGAGCATTGGCTTTGAATGGAATTATCCACTAGAGGAGCCGACCACTGAGCCACCAGTTAATCTCACAT
ACTCAGCAAACTCACCCGTGGGTCGCTAG

Translation (172 aa):
MLLLLTLALLGGPTWAGKMYGPGGGKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGG
NTQEVTLQPGEYITKVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGI
KSIGFEWNYPLEEPTTEPPVNLTYSANSPVGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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