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Report for CCDS31940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31940.1 Public Homo sapiens 12 ZNF84 24 110 108 CCDS HistoryNCBI Gene:7637Re-query CCDS DB by CCDS ID:31940.1Re-query CCDS DB by GeneID:7637See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327668.11 ENSP00000331465.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000327668.11Link to Ensembl Protein Viewer:ENSP00000331465.7Re-query CCDS DB by Nucleotide ID:ENST00000327668Re-query CCDS DB by Protein ID:ENSP00000331465
Original member Current member EBI ENST00000392319.6 ENSP00000376133.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392319.6Link to Ensembl Protein Viewer:ENSP00000376133.2Re-query CCDS DB by Nucleotide ID:ENST00000392319Re-query CCDS DB by Protein ID:ENSP00000376133
Original member Current member EBI ENST00000539354.6 ENSP00000445549.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000539354.6Link to Ensembl Protein Viewer:ENSP00000445549.1Re-query CCDS DB by Nucleotide ID:ENST00000539354Re-query CCDS DB by Protein ID:ENSP00000445549
Original member Current member NCBI NM_001127372.3 NP_001120844.1 Accepted alive Link to Nucleotide Sequence:NM_001127372.3Link to Protein Sequence:NP_001120844.1Re-query CCDS DB by Nucleotide ID:NM_001127372Re-query CCDS DB by Protein ID:NP_001120844Link to BLAST:NP_001120844.1
Original member Current member NCBI NM_001289971.2 NP_001276900.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001289971.2Link to Protein Sequence:NP_001276900.1Re-query CCDS DB by Nucleotide ID:NM_001289971Re-query CCDS DB by Protein ID:NP_001276900Link to BLAST:NP_001276900.1
Original member Current member NCBI NM_001289972.2 NP_001276901.1 Accepted alive Link to Nucleotide Sequence:NM_001289972.2Link to Protein Sequence:NP_001276901.1Re-query CCDS DB by Nucleotide ID:NM_001289972Re-query CCDS DB by Protein ID:NP_001276901Link to BLAST:NP_001276901.1
Original member Current member NCBI NM_003428.6 NP_003419.3 Accepted alive Link to Nucleotide Sequence:NM_003428.6Link to Protein Sequence:NP_003419.3Re-query CCDS DB by Nucleotide ID:NM_003428Re-query CCDS DB by Protein ID:NP_003419Link to BLAST:NP_003419.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120844.1 738 P51523 738 100% 0 0
NP_001276900.1 738 P51523 738 100% 0 0
NP_001276901.1 738 P51523 738 100% 0 0
NP_003419.3 738 P51523 738 100% 0 0

Chromosomal Locations for CCDS 31940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 133041468 133041482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 133047955 133048081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 133048753 133048848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 133056954 133058932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGACCATGTTACAGGAGTCATTCTCATTTGACGATTTATCTGTGGACTTCACCCAAAAGGAGTGGCAGC
TACTGGATCCCTCTCAGAAGAATTTATACAAGGATGTGATGTTGGAGAACTATAGCAGCCTAGTGTCACT
GGGGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGAT
GGAGAAATTCCAAGTTCAGATTCTCCAGAAGTCTGGAAAGTAGATGGTAACATGATGTGGCACCAGGATA
ACCAAGACAAGCTTAAAATTATAAAAAGAGGTCATGAATGTGATGCATTTGGAAAAAATTTCAATCTGAA
CATGAACTTTGTTCCTTTAAGGAAATCAAACAGTGAAGGTGACTTAGATGGATTGATTTTAAAACATCAT
TTAGATTTGCTTATTCCAAAAGGAGATTATGGAAAAGCAGAATCAGATGACTTTAATGTGTTTGATAATT
TTTTTCTCCATTCCAAGCCTGAGGATACTGATACCTGGTTAAAATACTATGACTGTGATAAATATAAAGA
GAGCTATAAAAAGTCACAGATTATCATATATCATAGAAATCGTTTAGGGGAGAAACTCTATGAATGCAGT
GAATGTAGGAAGCGCTTCAGTAAGAAACCAAGTCTCATTAAACATCAGAGCAGACATATAAGAGACATAG
CCTTTGGCTGTGGTAATTGTGGCAAAACCTTTCCCCAGAAGTCTCAGTTTATTACACATCACAGAACTCA
TACAGGAGAAAAACCTTATAATTGTAGCCAGTGTGGGAAAGCCTTCTCCCAAAAGTCACAGCTCACATCC
CATCAGCGGACACATACAGGAGAGAAACCTTATGAGTGTGGTGAATGTGGGAAAGCCTTCTCCCGGAAGT
CACATCTCATATCGCATTGGAGAACACACACAGGAGAGAAACCCTATGGATGCAATGAATGTGGGAGGGC
CTTTAGTGAAAAGTCCAATCTCATTAACCATCAGAGAATTCATACCGGTGAGAAGCCTTTTGAATGCAGG
GAATGTGGGAAAGCCTTCAGCAGGAAGTCACAACTCGTTACACATCACAGAACTCACACAGGAACAAAAC
CCTTTGGATGTAGTGATTGTAGAAAAGCATTCTTTGAGAAGTCAGAGCTTATTAGACATCAGACAATTCA
TACTGGAGAGAAACCCTATGAATGCAGCGAGTGTAGGAAAGCATTTAGAGAGAGGTCGAGTCTCATTAAT
CATCAGAGAACACATACAGGAGAGAAACCTCATGGATGCATTCAGTGTGGGAAGGCCTTCTCCCAGAAGT
CACATCTCATATCACATCAGATGACACACACAGGAGAAAAACCCTTTATATGCAGTAAATGTGGGAAAGC
CTTCAGCAGGAAATCACAGCTCGTTAGACATCAGAGAACTCATACGGGAGAAAAACCGTATGAATGCAGT
GAGTGTGGGAAAGCTTTCAGTGAAAAATTAAGTCTCACTAATCATCAAAGAATTCATACAGGAGAAAAAC
CATATGTATGCAGTGAATGTGGGAAAGCCTTTTGTCAGAAGTCACATCTCATATCACATCAGAGGACACA
TACAGGGGAGAAACCCTATGAATGCAGTGAATGTGGGAAGGCCTTTGGTGAGAAGTCAAGTCTTGCAACT
CATCAGAGAACTCATACTGGAGAAAAACCGTATGAATGCAGGGACTGTGAAAAAGCTTTCTCCCAGAAAT
CACAGCTAAATACCCATCAGAGAATTCACACTGGAGAGAAACCCTATGAATGCAGTCTTTGTAGGAAAGC
TTTTTTTGAGAAGTCGGAGCTAATTAGACATCTGAGAACTCATACAGGAGAAAAACCTTATGAATGCAAT
GAATGTAGAAAAGCCTTCAGGGAGAAGTCAAGTCTCATCAATCATCAGAGAATACATACAGGAGAGAAGC
CTTTTGAATGCAGTGAGTGTGGCAAAGCTTTCTCTCGGAAGTCACACCTTATACCACATCAAAGGACACA
TACGGGTGAGAAACCCTATGGATGCAGTGAATGTAGGAAGGCCTTCTCTCAGAAGTCACAGCTGGTTAAT
CATCAGAGAATTCATACAGGAGAGAAGCCTTATCGATGCATTGAATGTGGGAAAGCTTTCTCACAGAAGT
CACAGCTCATCAATCATCAGAGAACTCATACAGTAAAAAAATCCTAG

Translation (738 aa):
MTMLQESFSFDDLSVDFTQKEWQLLDPSQKNLYKDVMLENYSSLVSLGYEVMKPDVIFKLEQGEEPWVGD
GEIPSSDSPEVWKVDGNMMWHQDNQDKLKIIKRGHECDAFGKNFNLNMNFVPLRKSNSEGDLDGLILKHH
LDLLIPKGDYGKAESDDFNVFDNFFLHSKPEDTDTWLKYYDCDKYKESYKKSQIIIYHRNRLGEKLYECS
ECRKRFSKKPSLIKHQSRHIRDIAFGCGNCGKTFPQKSQFITHHRTHTGEKPYNCSQCGKAFSQKSQLTS
HQRTHTGEKPYECGECGKAFSRKSHLISHWRTHTGEKPYGCNECGRAFSEKSNLINHQRIHTGEKPFECR
ECGKAFSRKSQLVTHHRTHTGTKPFGCSDCRKAFFEKSELIRHQTIHTGEKPYECSECRKAFRERSSLIN
HQRTHTGEKPHGCIQCGKAFSQKSHLISHQMTHTGEKPFICSKCGKAFSRKSQLVRHQRTHTGEKPYECS
ECGKAFSEKLSLTNHQRIHTGEKPYVCSECGKAFCQKSHLISHQRTHTGEKPYECSECGKAFGEKSSLAT
HQRTHTGEKPYECRDCEKAFSQKSQLNTHQRIHTGEKPYECSLCRKAFFEKSELIRHLRTHTGEKPYECN
ECRKAFREKSSLINHQRIHTGEKPFECSECGKAFSRKSHLIPHQRTHTGEKPYGCSECRKAFSQKSQLVN
HQRIHTGEKPYRCIECGKAFSQKSQLINHQRTHTVKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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