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Report for CCDS32510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
32510.1 Public Homo sapiens 16 CDT1 24 110 108 CCDS HistoryNCBI Gene:81620Re-query CCDS DB by CCDS ID:32510.1Re-query CCDS DB by GeneID:81620See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 32510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301019.9 ENSP00000301019.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301019.9Link to Ensembl Protein Viewer:ENSP00000301019.4Re-query CCDS DB by Nucleotide ID:ENST00000301019Re-query CCDS DB by Protein ID:ENSP00000301019
Original member Current member NCBI NM_030928.4 NP_112190.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030928.4Link to Protein Sequence:NP_112190.2Re-query CCDS DB by Nucleotide ID:NM_030928Re-query CCDS DB by Protein ID:NP_112190Link to BLAST:NP_112190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112190.2 546 Q9H211 546 100% 0 0

Chromosomal Locations for CCDS 32510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 88803832 88804059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88804545 88804667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88804762 88804898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88805440 88805637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88805724 88805869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88806021 88806121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88806486 88806674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88807051 88807203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88807281 88807482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 88808115 88808278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGAGCAGCGCCGCGTCACCGACTTCTTCGCGCGCCGCCGCCCCGGGCCCCCCCGCATCGCGCCGCCCA
AGCTGGCCTGCCGCACCCCCAGCCCCGCCAGGCCCGCACTCCGCGCCCCGGCCTCCGCTACCAGTGGCAG
CCGCAAGCGCGCCCGCCCGCCCGCCGCCCCCGGACGCGACCAGGCCAGGCCACCGGCCCGCAGGAGACTG
CGGCTGTCGGTGGACGAGGTTTCCAGCCCCAGTACCCCCGAGGCCCCAGACATCCCAGCCTGCCCTTCTC
CGGGCCAGAAGATAAAGAAATCCACCCCGGCAGCAGGTCAGCCGCCCCACCTGACATCCGCGCAGGACCA
GGACACCATCTCTGAGCTTGCGTCATGCCTGCAACGGGCCCGGGAGCTGGGGGCAAGAGTCCGGGCGCTG
AAGGCCAGTGCCCAGGATGCTGGGGAGTCCTGCACCCCAGAGGCCGAGGGCCGCCCTGAGGAGCCATGTG
GCGAGAAGGCGCCCGCCTACCAGCGCTTCCATGCCCTGGCCCAGCCCGGCCTGCCGGGACTCGTGCTGCC
CTACAAGTACCAGGTGCTGGCGGAGATGTTCCGCAGCATGGACACCATCGTGGGCATGCTCCACAACCGC
TCCGAGACGCCCACCTTTGCCAAGGTCCAGCGGGGCGTCCAGGACATGATGCGTAGGCGTTTTGAGGAGT
GCAATGTTGGCCAGATCAAAACCGTGTACCCGGCCTCCTACCGCTTCCGCCAGGAGCGCAGTGTCCCCAC
CTTCAAGGATGGCACCAGGAGGTCAGATTACCAGCTCACCATCGAGCCACTGCTGGAGCAGGAGGCTGAC
GGAGCAGCCCCCCAGCTCACGGCCTCGCGCCTCCTGCAGCGACGGCAGATCTTCAGCCAGAAGCTGGTGG
AGCATGTCAAGGAGCACCACAAGGCCTTCCTGGCCTCCCTGAGCCCCGCCATGGTGGTGCCGGAGGACCA
GCTGACCCGCTGGCACCCGCGCTTCAACGTGGATGAAGTACCCGACATCGAGCCGGCCGCGCTGCCCCAG
CCACCCGCCACGGAGAAGCTCACCACTGCTCAGGAGGTGCTGGCCCGGGCCCGCAACCTGATTTCACCCA
GGATGGAGAAGGCCTTGAGTCAATTGGCCCTGCGCTCTGCTGCGCCCAGCAGCCCCGGGTCTCCCAGGCC
AGCACTGCCGGCTACCCCACCAGCCACCCCGCCTGCAGCCTCTCCCAGTGCTCTGAAGGGGGTGTCCCAG
GATCTGCTGGAGCGGATCCGAGCCAAGGAGGCACAGAAGCAGCTGGCACAGATGACGCGGTGCCCGGAGC
AGGAGCAGCGGCTGCAGCGCTTAGAACGGCTGCCTGAGCTGGCCCGCGTGCTGCGGAGCGTCTTTGTGTC
CGAACGCAAGCCTGCGCTCAGCATGGAGGTGGCCTGTGCCAGGATGGTGGGCAGCTGTTGTACTATCATG
AGCCCTGGGGAAATGGAGAAGCACCTGCTGCTCCTCTCCGAGCTGCTGCCGGACTGGCTCAGCCTCCACC
GCATCCGCACCGACACCTACGTCAAGCTGGACAAGGCCGCGGACCTCGCCCACATCACTGCACGCCTGGC
CCACCAGACACGTGCTGAGGAGGGGCTGTGA

Translation (546 aa):
MEQRRVTDFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL
RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRAL
KASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKYQVLAEMFRSMDTIVGMLHNR
SETPTFAKVQRGVQDMMRRRFEECNVGQIKTVYPASYRFRQERSVPTFKDGTRRSDYQLTIEPLLEQEAD
GAAPQLTASRLLQRRQIFSQKLVEHVKEHHKAFLASLSPAMVVPEDQLTRWHPRFNVDEVPDIEPAALPQ
PPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSPGSPRPALPATPPATPPAASPSALKGVSQ
DLLERIRAKEAQKQLAQMTRCPEQEQRLQRLERLPELARVLRSVFVSERKPALSMEVACARMVGSCCTIM
SPGEMEKHLLLLSELLPDWLSLHRIRTDTYVKLDKAADLAHITARLAHQTRAEEGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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