NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27345.1 Public Mus musculus 14 Tm9sf2 23 108 98 CCDS HistoryNCBI Gene:68059Re-query CCDS DB by CCDS ID:27345.1Re-query CCDS DB by GeneID:68059See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026624.10 ENSMUSP00000026624.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026624.10Link to Ensembl Protein Viewer:ENSMUSP00000026624.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026624Re-query CCDS DB by Protein ID:ENSMUSP00000026624
Original member Current member NCBI NM_080556.3 NP_542123.3 Accepted alive Link to Nucleotide Sequence:NM_080556.3Link to Protein Sequence:NP_542123.3Re-query CCDS DB by Nucleotide ID:NM_080556Re-query CCDS DB by Protein ID:NP_542123Link to BLAST:NP_542123.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542123.3 662 P58021 662 100% 0 0

Chromosomal Locations for CCDS 27345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 122107268 122107435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122123716 122123783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122126106 122126199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122133280 122133407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122137372 122137501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122139650 122139774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122141199 122141310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122142364 122142443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122143407 122143515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122145097 122145229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122146665 122146784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122147988 122148045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122149850 122150009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122150734 122150885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122151964 122152075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122155328 122155499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 122158649 122158716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAGCTCCAGGCCGCCAGCGTCGCCGCCAGCGCAAGGCTCCAGGTTGCTGCTGCTGTCGCTGCTCCTGC
TAGGGACGGTCCCAGGCCCGCGCCCGGGAAGCGCCTTCTACCTGCCCGGCCTGGCGCCGGTCAACTTCTG
CGCCGAAGAGAAGAGCAACGAGTGCAAGGCTGATATAGAATTGTTTGTTAACCGGCTTGATTCGGTGGAA
TCTGTTCTTCCTTATGAATATACAGCGTTTGACTTTTGCCAAGCGTCAGAAGGAAAACGCCCATCTGAAA
ATCTTGGTCAGGTATTATTCGGGGAAAGAATTGAACCCTCACCGTATAAGTTTACGTTTAATAAGAAGGA
AACCTGTAAGCTCGTTTGTACGAAAACATACAATACAGAGAAGGCTGAAGACAAACAAAAGTTAGACTTC
CTGAAAAAAAGCATGCTACTGAACTATCAGCATCACTGGATTGTGGATAATATGCCTGTCACGTGGTGCT
ATGAGGTTGAAGACAGTCAGAAGTTCTGTAATCCTGGATTTCCCATTGGCTGTTACATTACAGATAAAGG
CCATGCAAAGGATGCCTGTGTTATCAGTTCAGAATTCCACGAGAGAGACACTTTCTACATCTTCAATCAT
GTTGACATCAAGATATATTATCATGTTGTTGAAACTGGGTCTATGGGAGCAAGATTAGTGGCTGCTAAAC
TTGAACCAAAAAGCTTCAAGCATACCCACATAGATAAACCAGACTGCTCTGGACCTGCCATGGATATAAG
CAACAAGGCTTCAGGAGAGATCAAAATTGCCTATACTTATTCTATTAGTTTTGAGGAAGAGAAAAACATC
AGATGGGCGTCTAGGTGGGACTATATTCTGGAGTCTATGCCTCACACCCATATTCAGTGGTTTAGCATAA
TGAACTCCTTGGTTATTGTCCTCTTCTTATCTGGAATGGTAGCTATGATTATGTTACGCACGCTACATAA
AGATATTGCCAGATATAACCAGATGGACTCTACGGAAGATGCCCAGGAAGAATTTGGCTGGAAACTAGTT
CATGGGGATATATTCCGTCCTCCAAGAAAGGGGATGCTGCTGTCTGTCTTCCTAGGATCTGGAACACAGA
TTTTAATTATGACTTTTGTAACTCTGTTTTTTGCATGTCTGGGATTCTTGTCCCCTGCCAATCGAGGAGC
CCTGATGACATGTGCTGTGGTCTTGTGGGTGCTACTGGGCACACCTGCTGGCTATGTTGCTGCCAGATTC
TACAAATCCTTTGGTGGTGAAAAGTGGAAAACAAATGTTTTATTGACATCATTTCTTTGTCCTGGGATTG
TGTTTGCTGACTTCTTTATCATGAATCTAATCCTCTGGGGAGAAGGCTCTTCAGCAGCCATTCCTTTTGG
CACTCTGGTTGCCATCTTGGCCCTCTGGTTCTGCATATCTGTGCCTTTGACGTTTATTGGTGCATACTTT
GGCTTTAAGAAGAATGCCATTGAACACCCAGTTCGAACCAATCAGATCCCTCGTCAGATTCCTGAGCAGT
CGTTCTACACAAAGCCTTTGCCTGGCATCATCATGGGGGGCATTTTGCCTTTTGGCTGCATCTTTATACA
GCTTTTCTTCATTCTGAATAGCATTTGGTCCCACCAGATGTATTACATGTTTGGTTTCCTGTTTCTGGTG
TTTATCATTTTGGTTATTACCTGTTCCGAAGCAACTATACTTCTTTGCTACTTTCACCTATGTGCAGAGG
ATTACCATTGGCAGTGGCGTTCCTTCCTTACCAGCGGCTTCACAGCTGTTTACTTCCTGATATACGCCAT
ACACTACTTCTTCTCCAAACTGCAGATCACGGGGACAGCAAGTACAATCCTGTACTTCGGTTATACTATG
ATAATGGTTTTGATCTTCTTCCTTTTTACAGGAACAATTGGCTTCTTTGCATGCTTTTGGTTTGTTACCA
AAATATACAGTGTGGTGAAAGTGGACTGA

Translation (662 aa):
MSSRPPASPPAQGSRLLLLSLLLLGTVPGPRPGSAFYLPGLAPVNFCAEEKSNECKADIELFVNRLDSVE
SVLPYEYTAFDFCQASEGKRPSENLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAEDKQKLDF
LKKSMLLNYQHHWIVDNMPVTWCYEVEDSQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNH
VDIKIYYHVVETGSMGARLVAAKLEPKSFKHTHIDKPDCSGPAMDISNKASGEIKIAYTYSISFEEEKNI
RWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYNQMDSTEDAQEEFGWKLV
HGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLSPANRGALMTCAVVLWVLLGTPAGYVAARF
YKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYF
GFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLV
FIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTM
IMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH