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Report for CCDS43115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43115.1 Public Homo sapiens 3 OR5K1 24 110 108 CCDS HistoryNCBI Gene:26339Re-query CCDS DB by CCDS ID:43115.1Re-query CCDS DB by GeneID:26339See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332650.5 ENSP00000373193.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332650.5Link to Ensembl Protein Viewer:ENSP00000373193.2Re-query CCDS DB by Nucleotide ID:ENST00000332650Re-query CCDS DB by Protein ID:ENSP00000373193
Original member Current member EBI ENST00000642057.1 ENSP00000493267.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000642057.1Link to Ensembl Protein Viewer:ENSP00000493267.1Re-query CCDS DB by Nucleotide ID:ENST00000642057Re-query CCDS DB by Protein ID:ENSP00000493267
Original member Current member NCBI NM_001004736.4 NP_001004736.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004736.4Link to Protein Sequence:NP_001004736.2Re-query CCDS DB by Nucleotide ID:NM_001004736Re-query CCDS DB by Protein ID:NP_001004736Link to BLAST:NP_001004736.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004736.2 308 Q8NHB7 308 100% 0 0

Chromosomal Locations for CCDS 43115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 98469577 98470503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCTGAAGAAAATCATACCATGAAAAATGAGTTTATCCTCACAGGATTTACAGATCACCCTGAGCTGA
AGACTCTGCTGTTTGTGGTGTTCTTTGCCATCTATCTGATCACCGTGGTGGGGAATATTAGTTTGGTGGC
ACTGATATTTACACACCGTCGGCTTCACACACCAATGTACATCTTTCTGGGAAATCTGGCTCTTGTGGAT
TCTTGCTGTGCCTGTGCTATTACCCCCAAAATGTTAGAGAACTTCTTTTCTGAGAACAAAAGGATTTCCC
TCTATGAATGTGCAGTACAGTTTTATTTTCTTTGCACTGTGGAAACTGCAGACTGCTTTCTTCTGGCAGC
AATGGCCTATGACCGCTATGTGGCCATATGCAACCCACTGCAGTACCACATCATGATGTCCAAGAAACTC
TGCATTCAGATGACCACAGGGGCCTTCATAGCTGGAAACCTGCATTCCATGATTCATGTAGGGCTTGTAT
TTAGGTTAGTTTTCTGTGGATCGAATCACATCAACCACTTTTACTGTGATATTCTTCCCTTGTATAGACT
CTCTTGTGTTGATCCTTATATCAATGAACTGGTTCTATTCATCTTCTCAGGTTCAGTTCAAGTCTTTACC
ATAGGTAGTGTCTTAATATCTTATCTCTATATTCTTCTTACTATTTTCAAAATGAAATCCAAAGAGGGAA
GGGCCAAAGCTTTTTCTACCTGTGCATCCCACTTTTTGTCAGTTTCATTATTCTATGGATCTCTTTTCTT
CATGTACGTTAGACCAAATTTGCTTGAAGAAGGGGATAAAGATATACCAGCTGCAATTTTATTTACAATA
GTAGTTCCCTTACTAAATCCTTTCATTTATAGCCTGAGAAATAGGGAAGTAATAAGTGTCTTAAGAAAAA
TTCTGATGAAGAAATAA

Translation (308 aa):
MAEENHTMKNEFILTGFTDHPELKTLLFVVFFAIYLITVVGNISLVALIFTHRRLHTPMYIFLGNLALVD
SCCACAITPKMLENFFSENKRISLYECAVQFYFLCTVETADCFLLAAMAYDRYVAICNPLQYHIMMSKKL
CIQMTTGAFIAGNLHSMIHVGLVFRLVFCGSNHINHFYCDILPLYRLSCVDPYINELVLFIFSGSVQVFT
IGSVLISYLYILLTIFKMKSKEGRAKAFSTCASHFLSVSLFYGSLFFMYVRPNLLEEGDKDIPAAILFTI
VVPLLNPFIYSLRNREVISVLRKILMKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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