NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2570.1 Public Homo sapiens 3 OXTR 24 110 108 CCDS HistoryNCBI Gene:5021Re-query CCDS DB by CCDS ID:2570.1Re-query CCDS DB by GeneID:5021See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316793.8 ENSP00000324270.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316793.8Link to Ensembl Protein Viewer:ENSP00000324270.2Re-query CCDS DB by Nucleotide ID:ENST00000316793Re-query CCDS DB by Protein ID:ENSP00000324270
Original member Current member NCBI NM_000916.4 NP_000907.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000916.4Link to Protein Sequence:NP_000907.2Re-query CCDS DB by Nucleotide ID:NM_000916Re-query CCDS DB by Protein ID:NP_000907Link to BLAST:NP_000907.2
Original member Current member NCBI NM_001354653.2 NP_001341582.1 Accepted alive Link to Nucleotide Sequence:NM_001354653.2Link to Protein Sequence:NP_001341582.1Re-query CCDS DB by Nucleotide ID:NM_001354653Re-query CCDS DB by Protein ID:NP_001341582Link to BLAST:NP_001341582.1
Original member Current member NCBI NM_001354654.2 NP_001341583.1 Accepted alive Link to Nucleotide Sequence:NM_001354654.2Link to Protein Sequence:NP_001341583.1Re-query CCDS DB by Nucleotide ID:NM_001354654Re-query CCDS DB by Protein ID:NP_001341583Link to BLAST:NP_001341583.1
Original member Current member NCBI NM_001354655.2 NP_001341584.1 Accepted alive Link to Nucleotide Sequence:NM_001354655.2Link to Protein Sequence:NP_001341584.1Re-query CCDS DB by Nucleotide ID:NM_001354655Re-query CCDS DB by Protein ID:NP_001341584Link to BLAST:NP_001341584.1
Original member Current member NCBI NM_001354656.3 NP_001341585.1 Accepted alive Link to Nucleotide Sequence:NM_001354656.3Link to Protein Sequence:NP_001341585.1Re-query CCDS DB by Nucleotide ID:NM_001354656Re-query CCDS DB by Protein ID:NP_001341585Link to BLAST:NP_001341585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000907.2 389 P30559 389 100% 0 0
NP_001341582.1 389 P30559 389 100% 0 0
NP_001341583.1 389 P30559 389 100% 0 0
NP_001341584.1 389 P30559 389 100% 0 0
NP_001341585.1 389 P30559 389 100% 0 0

Chromosomal Locations for CCDS 2570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 8752977 8753224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 8767266 8768187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGAGGGCGCGCTCGCAGCCAACTGGAGCGCCGAGGCAGCCAACGCCAGCGCCGCGCCGCCGGGGGCCG
AGGGCAACCGCACCGCCGGACCCCCGCGGCGCAACGAGGCCCTGGCGCGCGTGGAGGTGGCGGTGCTGTG
TCTCATCCTGCTCCTGGCGCTGAGCGGGAACGCGTGTGTGCTGCTGGCGCTGCGCACCACACGCCAGAAG
CACTCGCGCCTCTTCTTCTTCATGAAGCACCTAAGCATCGCCGACCTGGTGGTGGCAGTGTTTCAGGTGC
TGCCGCAGTTGCTGTGGGACATCACCTTCCGCTTCTACGGGCCCGACCTGCTGTGCCGCCTGGTCAAGTA
CTTGCAGGTGGTGGGCATGTTCGCCTCCACCTACCTGCTGCTGCTCATGTCCCTGGACCGCTGCCTGGCC
ATCTGCCAGCCGCTGCGCTCGCTGCGCCGCCGCACCGACCGCCTGGCAGTGCTCGCCACGTGGCTCGGCT
GCCTGGTGGCCAGCGCGCCGCAGGTGCACATCTTCTCTCTGCGCGAGGTGGCTGACGGCGTCTTCGACTG
CTGGGCCGTCTTCATCCAGCCCTGGGGACCCAAGGCCTACATCACATGGATCACGCTAGCTGTCTACATC
GTGCCGGTCATCGTGCTCGCTGCCTGCTACGGCCTTATCAGCTTCAAGATCTGGCAGAACTTGCGGCTCA
AGACCGCTGCAGCGGCGGCGGCCGAGGCGCCAGAGGGCGCGGCGGCTGGCGATGGGGGGCGCGTGGCCCT
GGCGCGTGTCAGCAGCGTCAAGCTCATCTCCAAGGCCAAGATCCGCACGGTCAAGATGACTTTCATCATC
GTGCTGGCCTTCATCGTGTGCTGGACGCCTTTCTTCTTCGTGCAGATGTGGAGCGTCTGGGATGCCAACG
CGCCCAAGGAAGCCTCGGCCTTCATCATCGTCATGCTCCTGGCCAGCCTCAACAGCTGCTGCAACCCCTG
GATCTACATGCTGTTCACGGGCCACCTCTTCCACGAACTCGTGCAGCGCTTCCTGTGCTGCTCCGCCAGC
TACCTGAAGGGCAGACGCCTGGGAGAGACGAGTGCCAGCAAAAAGAGCAACTCGTCCTCCTTTGTCCTGA
GCCATCGCAGCTCCAGCCAGAGGAGCTGCTCCCAGCCATCCACGGCGTGA

Translation (389 aa):
MEGALAANWSAEAANASAAPPGAEGNRTAGPPRRNEALARVEVAVLCLILLLALSGNACVLLALRTTRQK
HSRLFFFMKHLSIADLVVAVFQVLPQLLWDITFRFYGPDLLCRLVKYLQVVGMFASTYLLLLMSLDRCLA
ICQPLRSLRRRTDRLAVLATWLGCLVASAPQVHIFSLREVADGVFDCWAVFIQPWGPKAYITWITLAVYI
VPVIVLAACYGLISFKIWQNLRLKTAAAAAAEAPEGAAAGDGGRVALARVSSVKLISKAKIRTVKMTFII
VLAFIVCWTPFFFVQMWSVWDANAPKEASAFIIVMLLASLNSCCNPWIYMLFTGHLFHELVQRFLCCSAS
YLKGRRLGETSASKKSNSSSFVLSHRSSSQRSCSQPSTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH