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Report for CCDS73550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73550.1 Public Homo sapiens 12 ZNF140 24 110 108 CCDS HistoryNCBI Gene:7699Re-query CCDS DB by CCDS ID:73550.1Re-query CCDS DB by GeneID:7699See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73550.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544426.5 ENSP00000445411.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544426.5Link to Ensembl Protein Viewer:ENSP00000445411.1Re-query CCDS DB by Nucleotide ID:ENST00000544426Re-query CCDS DB by Protein ID:ENSP00000445411
Original member Current member NCBI NM_001300776.2 NP_001287705.1 Accepted alive Link to Nucleotide Sequence:NM_001300776.2Link to Protein Sequence:NP_001287705.1Re-query CCDS DB by Nucleotide ID:NM_001300776Re-query CCDS DB by Protein ID:NP_001287705Link to BLAST:NP_001287705.1
Original member Current member NCBI NM_001300778.2 NP_001287707.1 Accepted alive Link to Nucleotide Sequence:NM_001300778.2Link to Protein Sequence:NP_001287707.1Re-query CCDS DB by Nucleotide ID:NM_001300778Re-query CCDS DB by Protein ID:NP_001287707Link to BLAST:NP_001287707.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287705.1 354 P52738-2 354 100% 0 0
NP_001287707.1 354 P52738-2 354 100% 0 0

Chromosomal Locations for CCDS 73550.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 133105587 133106651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGAAAGAATTCTAAGTCAAGGCCCTGTGTATTCCAGTTTTAAAGGAGGCTGGAAATGCAAGGATCATA
CTGAGATGCTGCAAGAAAATCAGGGATGTATTAGGAAAGTAACAGTCTCTCATCAAGAAGCCCTGGCTCA
ACATATGAATATCAGTACTGTGGAGAGGCCCTATGGATGCCATGAATGTGGAAAAACTTTTGGTCGACGC
TTTTCCCTGGTGTTACACCAGAGGACTCATACTGGAGAGAAACCATATGCATGTAAGGAATGTGGCAAAA
CCTTTAGCCAGATTTCAAACCTTGTGAAACACCAAATGATACATACTGGAAAGAAACCCCATGAGTGTAA
GGACTGTAATAAAACATTCAGTTACCTTTCATTTCTTATTGAACACCAGAGAACGCACACTGGGGAGAAA
CCTTATGAATGTACTGAGTGTGGAAAGGCCTTTAGCCGTGCCTCCAACCTCACTCGACATCAAAGAATTC
ACATAGGAAAGAAACAATATATATGTAGGAAATGTGGTAAAGCATTTAGCAGTGGCTCAGAACTCATTCG
CCACCAGATTACACATACTGGAGAGAAACCTTATGAATGCATTGAATGTGGGAAGGCATTTCGCCGTTTC
TCACACCTTACTCGACATCAGAGCATCCATACAACCAAAACCCCGTATGAATGTAATGAATGTAGGAAAG
CTTTCCGTTGTCACTCATTCCTTATTAAACATCAGAGAATTCATGCTGGAGAAAAGCTCTATGAATGTGA
TGAATGTGGTAAAGTTTTCACTTGGCATGCATCCCTTATTCAACATACGAAGAGTCACACTGGAGAGAAA
CCCTATGCGTGTGCTGAATGTGATAAAGCCTTCAGCCGGAGCTTTTCCCTCATTCTACATCAGAGAACTC
ATACTGGAGAGAAACCCTATGTATGTAAGGTATGCAACAAATCCTTCAGCTGGAGCTCAAACCTTGCTAA
ACATCAGAGGACACACACTCTTGACAACCCCTATGAATATGAAAATTCATTTAATTACCACTCATTCCTT
ACTGAACACCAGTGA

Translation (354 aa):
MERILSQGPVYSSFKGGWKCKDHTEMLQENQGCIRKVTVSHQEALAQHMNISTVERPYGCHECGKTFGRR
FSLVLHQRTHTGEKPYACKECGKTFSQISNLVKHQMIHTGKKPHECKDCNKTFSYLSFLIEHQRTHTGEK
PYECTECGKAFSRASNLTRHQRIHIGKKQYICRKCGKAFSSGSELIRHQITHTGEKPYECIECGKAFRRF
SHLTRHQSIHTTKTPYECNECRKAFRCHSFLIKHQRIHAGEKLYECDECGKVFTWHASLIQHTKSHTGEK
PYACAECDKAFSRSFSLILHQRTHTGEKPYVCKVCNKSFSWSSNLAKHQRTHTLDNPYEYENSFNYHSFL
TEHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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