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Report for CCDS54814.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54814.1 Public Homo sapiens 4 MARCHF1 24 110 108 CCDS HistoryNCBI Gene:55016Re-query CCDS DB by CCDS ID:54814.1Re-query CCDS DB by GeneID:55016See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54814.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274056.11 ENSP00000274056.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000274056.11Link to Ensembl Protein Viewer:ENSP00000274056.7Re-query CCDS DB by Nucleotide ID:ENST00000274056Re-query CCDS DB by Protein ID:ENSP00000274056
Original member Current member EBI ENST00000503008.5 ENSP00000427223.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503008.5Link to Ensembl Protein Viewer:ENSP00000427223.1Re-query CCDS DB by Nucleotide ID:ENST00000503008Re-query CCDS DB by Protein ID:ENSP00000427223
Original member Current member NCBI NM_001166373.2 NP_001159845.1 Accepted alive Link to Nucleotide Sequence:NM_001166373.2Link to Protein Sequence:NP_001159845.1Re-query CCDS DB by Nucleotide ID:NM_001166373Re-query CCDS DB by Protein ID:NP_001159845Link to BLAST:NP_001159845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159845.1 289 Q8TCQ1-1 289 100% 0 0

Chromosomal Locations for CCDS 54814.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 163528748 163529046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163545596 163545743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163585749 163585929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163613314 163613393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163700813 163700863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 163854021 163854131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCTGGGCTGGTGTGAAGCGATAGCCCGTAACCCTCACAGAATTCCAAACAACACGCGAACACCCGAGA
TCTCAGGGGATTTGGCTGACGCCTCACAAACCTCCACATTGAATGAAAAATCCCCAGGGCGATCTGCAAG
TCGATCAAGTAACATTTCAAAAGCAAGCAGCCCAACAACAGGGACAGCTCCCAGGAGCCAGTCAAGGTTG
TCTGTCTGTCCATCCACTCAGGACATCTGCAGAATCTGTCACTGCGAAGGGGATGAAGAGAGCCCCCTCA
TCACACCCTGTCGCTGCACTGGGACACTGCGCTTTGTCCACCAGTCCTGCCTCCACCAGTGGATAAAGAG
CTCAGATACACGCTGCTGTGAGCTCTGCAAGTATGACTTCATAATGGAGACCAAGCTCAAACCCCTCCGG
AAGTGGGAGAAACTACAGATGACCACAAGTGAAAGGAGGAAAATATTCTGCTCTGTCACATTCCACGTAA
TCGCGATCACCTGTGTGGTTTGGTCTTTGTATGTATTGATAGACCGGACAGCGGAGGAAATCAAGCAAGG
CAATGACAATGGTGTCCTTGAATGGCCATTTTGGACAAAACTGGTTGTGGTAGCCATTGGCTTCACAGGA
GGTCTTGTCTTCATGTACGTACAGTGTAAAGTCTATGTTCAGTTGTGGCGCAGGCTGAAGGCCTACAACC
GTGTGATCTTTGTACAAAATTGCCCAGACACTGCCAAAAAACTGGAGAAGAACTTCTCATGTAATGTAAA
CACAGACATCAAAGATGCTGTGGTAGTGCCTGTACCACAAACAGGTGCAAATTCACTGCCATCTGCAGAG
GGTGGCCCCCCTGAAGTTGTATCAGTCTGA

Translation (289 aa):
MLGWCEAIARNPHRIPNNTRTPEISGDLADASQTSTLNEKSPGRSASRSSNISKASSPTTGTAPRSQSRL
SVCPSTQDICRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYDFIMETKLKPLR
KWEKLQMTTSERRKIFCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGNDNGVLEWPFWTKLVVVAIGFTG
GLVFMYVQCKVYVQLWRRLKAYNRVIFVQNCPDTAKKLEKNFSCNVNTDIKDAVVVPVPQTGANSLPSAE
GGPPEVVSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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