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Report for CCDS54154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54154.1 Public Homo sapiens 17 TUBD1 24 110 108 CCDS HistoryNCBI Gene:51174Re-query CCDS DB by CCDS ID:54154.1Re-query CCDS DB by GeneID:51174See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54154.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394239.7 ENSP00000377785.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394239.7Link to Ensembl Protein Viewer:ENSP00000377785.3Re-query CCDS DB by Nucleotide ID:ENST00000394239Re-query CCDS DB by Protein ID:ENSP00000377785
Original member Current member NCBI NM_001193610.2 NP_001180539.1 Accepted alive Link to Nucleotide Sequence:NM_001193610.2Link to Protein Sequence:NP_001180539.1Re-query CCDS DB by Nucleotide ID:NM_001193610Re-query CCDS DB by Protein ID:NP_001180539Link to BLAST:NP_001180539.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180539.1 396 Q9UJT1-5 396 100% 0 0

Chromosomal Locations for CCDS 54154.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 59860322 59860424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59866596 59866749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59874539 59874703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59878103 59878334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59880894 59881110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59886083 59886230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 59890831 59891002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGTCAATTGTAACAGTGCAACTTGGTCAGTGTGGCAATCAGATTGGTTTTGAAGTTTTTGATGCTTTGC
TTAGTGACTCACACAGTTCCCAGGGACTCTGCTCTATGAGAGAGAATGAGGCATATCAAGCATCTTGCAA
AGAAAGATTCTTCAGTGAGGAGGAGAATGGAGTTCCAATTGCCCGGGCTGTTCTTGTTGACATGGAACCC
AAAGTTATCAATCAAATGCTGTCAAAGGCTGCCCAGTCTGGCCAATGGAAATATGGTCAACATGCATGCT
TCTGTCAAAAACAAGGTTCTGGAAACAACTGGGCATATGGTTACTCTGTTCATGGACCCAGGCATGAAGA
ATCTATAATGAACATAATCCGGAAGGAAGTGGAGAAATGTGACTCTTTCAGTGGTTTTTTCATCATAATG
AGTATGGCTGGGGGCACAGGATCAGGATTAGGAGCTTTCGTTACACAGAATTTAGAAGATCAGTACTCAA
ACTCATTGAAAATGAATCAGATTATTTGGCCTTATGGAACTGGTGAGGTTATTGTTCAAAACTACAACTC
CATTTTGACACTTTCTCACTTGTACCGATCTTCAGACGCCCTCCTTCTTCATGAGAATGATGCCATCCAT
AAGATCTGTGCAAAACTGATGAATATCAAGCAGATCTCCTTTAGTGATATCAATCAAGTCCTCGCACATC
AGCTGGGAAGTGTGTTCCAGCCTACTTATTCTGCAGAAAGCTCATTTCACTACAGACGAAATCCACTAGG
AGACTTAATGGAGCATTTAGTTCCCCATCCTGAATTCAAGATGCTGAGTGTTCGTAACATTCCTCACATG
TCTGAGAATTCATTGGCATACACCACATTTACTTGGGCTGGCCTCCTCAAGCATTTGAGACAGATGCTCA
TTTCTAATGCAAAGATGGAAGAAGGTATTGATAGGCATGTATGGCCTCCTTTATCAGGACTTCCTCCTCT
TAGTAAAATGTCTCTCAACAAGGACCTGCATTTTAACACTTCCATTGCTAACTTGGTCATTCTTCGTGGG
AAAGATGTGCAAAGTGCAGATGTGGGTAAGAAATTCAGAGCCTACATTCATCAGTACACAAAATTTGGAA
TCGAAGAAGAGGACTTTTTAGACAGTTTCACGTCATTAGAGCAGGTTGTTGCCAGTTACTGTAATCTCTG
A

Translation (396 aa):
MSIVTVQLGQCGNQIGFEVFDALLSDSHSSQGLCSMRENEAYQASCKERFFSEEENGVPIARAVLVDMEP
KVINQMLSKAAQSGQWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIM
SMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPYGTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIH
KICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHM
SENSLAYTTFTWAGLLKHLRQMLISNAKMEEGIDRHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRG
KDVQSADVGKKFRAYIHQYTKFGIEEEDFLDSFTSLEQVVASYCNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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