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Report for CCDS8483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8483.1 Public Homo sapiens 11 NFRKB 24 110 108 CCDS HistoryNCBI Gene:4798Re-query CCDS DB by CCDS ID:8483.1Re-query CCDS DB by GeneID:4798See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524794.5 ENSP00000436926.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524794.5Link to Ensembl Protein Viewer:ENSP00000436926.1Re-query CCDS DB by Nucleotide ID:ENST00000524794Re-query CCDS DB by Protein ID:ENSP00000436926
Original member Current member NCBI NM_006165.4 NP_006156.2 Accepted alive Link to Nucleotide Sequence:NM_006165.4Link to Protein Sequence:NP_006156.2Re-query CCDS DB by Nucleotide ID:NM_006165Re-query CCDS DB by Protein ID:NP_006156Link to BLAST:NP_006156.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006156.2 1324 Q6P4R8-2 1324 100% 0 0

Chromosomal Locations for CCDS 8483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 129864725 129864850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129864966 129865101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129865877 129865983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129869494 129870261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129872884 129873096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129873745 129874015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874113 129874333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874501 129874580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874793 129874916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129875357 129875463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129876721 129876895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129877325 129877385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129878309 129878355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129878464 129878543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129881443 129881508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129881727 129881853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129882086 129882194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129882451 129882631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129883122 129883206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129884070 129884143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129884745 129884882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129885435 129885609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129886317 129886444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129888594 129888795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129892715 129892888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3975 nt):
ATGCATGTCTTTGTCCAGAGTACCTGTGGAGAAGAAACAATGGATTCCTTAGACCATATGCTGACAGATC
CTCTGGAACTTGGTCCGTGTGGAGATGGCCATGGCACGCGCATCATGGAGGATTGCCTCCTGGGAGGCAC
CAGAGTTAGTCTGCCCGAGGACCTTCTGGAGGATCCTGAGATCTTCTTTGATGTTGTCAGCCTCTCAACA
TGGCAGGAAGTGTTAAGTGATTCTCAACGTGAACACCTCCAGCAGTTTCTGCCCCAGTTTCCTGAAGACA
GTGCTGAGCAGCAGAATGAACTCATCTTAGCCTTGTTCAGTGGGGAGAACTTCCGCTTTGGAAACCCTCT
GCACATTGCCCAGAAGCTTTTCCGAGACGGACACTTTAACCCCGAGGTGGTCAAGTACCGGCAGTTATGC
TTCAAGTCACAGTACAAGCGCTACCTCAACTCCCAGCAGCAGTATTTCCATCGGCTGCTGAAGCAAATTC
TTGCTTCCCGGAGTGATCTGCTGGAGATGGCCCGGCGGAGTGGCCCCGCCCTTCCCTTCCGGCAGAAACG
CCCTTCACCATCCCGCACACCTGAGGAGCGGGAGTGGCGGACCCAGCAGCGCTACTTGAAGGTCTTAAGG
GAAGTGAAAGAGGAGTGTGGTGACACAGCCCTGTCATCTGATGAAGAGGCCACGTTGGATTTACAAGAAC
AATTTTCTTTTGAAGATCTCAGCTCATGGCTTCCGAGCTCTCCAGCACGTTCTCCTAGTCCTGCGGTGCC
CCTGCGGGTGGTGCCCACACTTTCAACCACGGATATGAAAACTGCAGATAAAGTAGAACTGGGGGACAGT
GACCTGAAGATAATGTTAAAGAAGCACCACGAGAAGCGGAAACATCAGCCAGATCACCCGGACCTTTTGA
CAGGGGACCTGACTCTCAATGACATCATGACTCGAGTAAATGCTGGCAGGAAGGGCTCTCTGGCAGCCTT
ATATGACTTGGCTGTCCTTAAAAAAAAGGTTAAGGAAAAAGAGGAAAAGAAGAAGAAGAAAATAAAAACG
ATCAAATCAGAGGCAGAGGACCTGGCCGAGCCGCTAAGCAGTACTGAAGGGGTCGCACCTCTCTCACAGG
CCCCCTCTCCGCTGGCAATTCCTGCTATCAAGGAAGAGCCCCTTGAAGACCTCAAGCCTTGCCTTGGAAT
CAATGAAATATCTTCCAGCTTCTTCTCTCTTCTATTAGAGATCTTGCTGCTGGAGAGTCAGGCTAGCCTT
CCTATGCTAGAGGAGCGAGTTTTGGATTGGCAGTCATCGCCAGCCAGCTCCCTCAACAGCTGGTTCTCTG
CGGCCCCCAACTGGGCTGAGTTGGTACTACCAGCCCTGCAGTATCTTGCTGGAGAAAGTCGAGCTGTTCC
TTCCAGTTTCTCTCCATTTGTTGAATTCAAAGAGAAAACCCAGCAGTGGAAGTTGCTTGGCCAATCCCAA
GATAATGAAAAGGAATTAGCTGCCCTCTTCCAGCTATGGCTAGAGACCAAAGATCAGGCCTTCTGTAAGC
AAGAAAATGAAGACAGCTCAGATGCCACAACACCTGTCCCTCGGGTAAGAACTGACTATGTGGTGCGTCC
CAGCACGGGGGAGGAGAAACGGGTTTTTCAGGAGCAGGAGCGTTACAGGTATAGCCAACCCCATAAGGCG
TTCACCTTTCGCATGCACGGCTTTGAGTCTGTGGTGGGGCCAGTGAAGGGCGTGTTTGACAAGGAGACCT
CGCTCAACAAGGCTCGGGAGCACTCCCTGCTGCGCTCCGACCGGCCTGCCTACGTCACCATTCTGTCTCT
TGTTCGGGACGCTGCGGCTCGACTGCCTAATGGAGAAGGCACACGGGCAGAGATCTGTGAACTGCTTAAG
GACTCCCAGTTTCTTGCACCAGATGTCACCAGCACTCAGGTAAATACAGTAGTGAGTGGTGCACTGGATC
GGCTACATTACGAAAAAGATCCCTGTGTGAAATACGACATTGGACGAAAGCTGTGGATCTACCTGCATCG
TGACCGGAGTGAAGAAGAGTTTGAGCGGATTCACCAAGCACAAGCAGCTGCAGCTAAAGCCAGAAAAGCT
CTTCAGCAAAAACCCAAGCCCCCATCCAAGGTGAAGTCCAGTAGCAAGGAGAGCTCCATAAAGGTCCTTA
GCAGTGGCCCTTCTGAGCAGAGCCAGATGAGCCTCAGTGACTCCAGTATGCCACCCACCCCAGTCACACC
TGTAACCCCCACCACACCAGCATTGCCCGCCATTCCCATCTCCCCTCCACCTGTATCGGCAGTGAACAAA
AGCGGCCCTTCCACAGTCTCAGAACCAGCTAAGTCTAGCTCGGGTGTTCTTCTGGTGTCTTCACCAACAA
TGCCACATCTGGGAACAATGCTTTCCCCAGCTTCCAGCCAGACTGCACCCAGTTCTCAGGCTGCCGCCCG
GGTCGTGAGCCACTCTGGCTCTGCTGGACTGTCTCAGGTGCGAGTGGTGGCCCAGCCTAGCCTTCCTGCT
GTTCCCCAGCAGTCGGGAGGGCCGGCACAGACATTGCCACAGATGCCAGCAGGACCGCAGATCCGGGTTC
CAGCCACTGCCACACAGACCAAAGTAGTGCCCCAGACAGTAATGGCCACTGTGCCCGTCAAAGCGCAGAC
TACGGCAGCCACTGTGCAGCGGCCTGGACCCGGGCAGACAGGGCTCACGGTGACAAGTCTCCCTGCCACA
GCCAGCCCTGTGAGTAAGCCAGCCACGAGTTCTCCTGGGACCTCTGCTCCCAGTGCCTCCACGGCTGCCG
TCATTCAAAATGTCACAGGACAGAACATCATCAAGCAGGTGGCAATCACTGGGCAGCTTGGTGTGAAGCC
CCAAACAGGCAACAGCATTCCACTCACAGCCACTAACTTCCGCATCCAGGGTAAGGATGTATTGCGTCTG
CCGCCCTCTTCCATCACCACAGATGCCAAGGGCCAGACGGTTCTGCGAATCACTCCGGACATGATGGCCA
CATTGGCCAAGTCCCAGGTTACCACAGTCAAATTGACCCAGGACCTCTTCGGGACAGGAGGCAACACTAC
AGGCAAAGGCATCTCTGCCACCTTACACGTCACTTCCAATCCAGTACATGCAGCTGATAGCCCTGCCAAG
GCCAGTTCAGCCAGTGCCCCTTCATCCACTCCAACAGGTACCACTGTGGTCAAAGTGACTCCTGACCTCA
AGCCAACAGAAGCCTCAAGTTCGGCTTTTCGCTTGATGCCAGCTCTTGGCGTGAGTGTGGCTGACCAGAA
GGGAAAAAGCACAGTGGCCTCTTCAGAAGCAAAACCAGCTGCCACGATCCGCATCGTGCAGGGACTGGGA
GTGATGCCTCCCAAAGCAGGCCAGACCATCACCGTTGCAACCCACGCCAAGCAAGGGGCCTCGGTGGCCA
GTGGGTCTGGAACTGTCCATACTTCAGCGGTGTCCTTACCCAGTATGAATGCTGCTGTGTCCAAGACTGT
AGCTGTGGCTTCTGGGGCTGCAAGCACCCCCATCAGCATCAGCACAGGAGCCCCCACCGTGCGGCAGGTC
CCTGTCAGCACCACGGTTGTGTCCACGTCCCAGGCTGGGAAGTTGCCTACACGGATCACAGTTCCCCTCT
CTGTGATCAGCCAGCCAATGAAGGGCAAGAGCGTGGTCACAGCCCCCATCATCAAAGGCAACCTTGGAGC
CAACCTCAGTGGGTTGGGCCGCAACATCATCCTCACAACTATGCCAGCAGGCACTAAGCTCATTGCTGGC
AATAAGCCTGTTAGTTTCCTCACTGCTCAGCAGTTGCAGCAGCTTCAGCAGCAAGGTCAGGCCACACAGG
TGCGCATCCAGACTGTCCCTGCATCCCATCTCCAACAGGGAACAGCTTCTGGCTCCTCCAAAGCAGTCTC
CACTGTTGTTGTGACTACAGCTCCGTCTCCTAAACAGGCACCTGAGCAACAATGA

Translation (1324 aa):
MHVFVQSTCGEETMDSLDHMLTDPLELGPCGDGHGTRIMEDCLLGGTRVSLPEDLLEDPEIFFDVVSLST
WQEVLSDSQREHLQQFLPQFPEDSAEQQNELILALFSGENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLC
FKSQYKRYLNSQQQYFHRLLKQILASRSDLLEMARRSGPALPFRQKRPSPSRTPEEREWRTQQRYLKVLR
EVKEECGDTALSSDEEATLDLQEQFSFEDLSSWLPSSPARSPSPAVPLRVVPTLSTTDMKTADKVELGDS
DLKIMLKKHHEKRKHQPDHPDLLTGDLTLNDIMTRVNAGRKGSLAALYDLAVLKKKVKEKEEKKKKKIKT
IKSEAEDLAEPLSSTEGVAPLSQAPSPLAIPAIKEEPLEDLKPCLGINEISSSFFSLLLEILLLESQASL
PMLEERVLDWQSSPASSLNSWFSAAPNWAELVLPALQYLAGESRAVPSSFSPFVEFKEKTQQWKLLGQSQ
DNEKELAALFQLWLETKDQAFCKQENEDSSDATTPVPRVRTDYVVRPSTGEEKRVFQEQERYRYSQPHKA
FTFRMHGFESVVGPVKGVFDKETSLNKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICELLK
DSQFLAPDVTSTQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDRSEEEFERIHQAQAAAAKARKA
LQQKPKPPSKVKSSSKESSIKVLSSGPSEQSQMSLSDSSMPPTPVTPVTPTTPALPAIPISPPPVSAVNK
SGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQTAPSSQAAARVVSHSGSAGLSQVRVVAQPSLPA
VPQQSGGPAQTLPQMPAGPQIRVPATATQTKVVPQTVMATVPVKAQTTAATVQRPGPGQTGLTVTSLPAT
ASPVSKPATSSPGTSAPSASTAAVIQNVTGQNIIKQVAITGQLGVKPQTGNSIPLTATNFRIQGKDVLRL
PPSSITTDAKGQTVLRITPDMMATLAKSQVTTVKLTQDLFGTGGNTTGKGISATLHVTSNPVHAADSPAK
ASSASAPSSTPTGTTVVKVTPDLKPTEASSSAFRLMPALGVSVADQKGKSTVASSEAKPAATIRIVQGLG
VMPPKAGQTITVATHAKQGASVASGSGTVHTSAVSLPSMNAAVSKTVAVASGAASTPISISTGAPTVRQV
PVSTTVVSTSQAGKLPTRITVPLSVISQPMKGKSVVTAPIIKGNLGANLSGLGRNIILTTMPAGTKLIAG
NKPVSFLTAQQLQQLQQQGQATQVRIQTVPASHLQQGTASGSSKAVSTVVVTTAPSPKQAPEQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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