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Report for CCDS82161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82161.1 Public Homo sapiens 17 TOM1L1 24 110 108 CCDS HistoryNCBI Gene:10040Re-query CCDS DB by CCDS ID:82161.1Re-query CCDS DB by GeneID:10040See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000348161.8 ENSP00000343901.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000348161.8Link to Ensembl Protein Viewer:ENSP00000343901.4Re-query CCDS DB by Nucleotide ID:ENST00000348161Re-query CCDS DB by Protein ID:ENSP00000343901
Original member Current member EBI ENST00000536554.5 ENSP00000443099.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536554.5Link to Ensembl Protein Viewer:ENSP00000443099.1Re-query CCDS DB by Nucleotide ID:ENST00000536554Re-query CCDS DB by Protein ID:ENSP00000443099
Original member Current member NCBI NM_001321174.2 NP_001308103.1 Accepted alive Link to Nucleotide Sequence:NM_001321174.2Link to Protein Sequence:NP_001308103.1Re-query CCDS DB by Nucleotide ID:NM_001321174Re-query CCDS DB by Protein ID:NP_001308103Link to BLAST:NP_001308103.1
Original member Current member NCBI NM_001321175.2 NP_001308104.1 Accepted alive Link to Nucleotide Sequence:NM_001321175.2Link to Protein Sequence:NP_001308104.1Re-query CCDS DB by Nucleotide ID:NM_001321175Re-query CCDS DB by Protein ID:NP_001308104Link to BLAST:NP_001308104.1
Original member Current member NCBI NM_001321176.2 NP_001308105.1 Accepted alive Link to Nucleotide Sequence:NM_001321176.2Link to Protein Sequence:NP_001308105.1Re-query CCDS DB by Nucleotide ID:NM_001321176Re-query CCDS DB by Protein ID:NP_001308105Link to BLAST:NP_001308105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308103.1 399 O75674-3 399 100% 0 0
NP_001308104.1 399 O75674-3 399 100% 0 0
NP_001308105.1 399 O75674-3 399 100% 0 0

Chromosomal Locations for CCDS 82161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 54912675 54912815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54913748 54913873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54914639 54914743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54915746 54915862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54930073 54930206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54936649 54936709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54937109 54937226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54938924 54939020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54947261 54947312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54949518 54949623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54950045 54950126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54960566 54960626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGTGTGTGCAGAACTGTGGTCCAAGTTTCCAGTCTCTGATTGTGAAGAAGGAATTTGTTAAAGAGAATT
TAGTTAAGCTACTGAATCCCAGATACAACTTGCCATTAGACATTCAGAATAGAATCTTGAATTTCATTAA
GACTTGGTCACAGGGCTTCCCAGGAGGTGTGGATGTAAGCGAAGTCAAAGAAGTATACCTCGACCTGGTT
AAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCTGAAACAGCAAGACAAGAGACTGCTCAAATCT
CATCAAATCCTCCAACATCTGTCCCTACTGCACCAGCTCTTTCTTCTGTAATTGCTCCAAAGAACTCGAC
TGTTACATTGGTCCCAGAACAGATTGGAAAACTGCACAGTGAATTGGATATGGTGAAAATGAATGTGCGA
GTGATGTCCGCCATATTGATGGAGAATACTCCTGGGTCTGAAAACCATGAAGACATAGAGCTTCTGCAGA
AACTCTATAAAACAGGTCGGGAGATGCAGGAGAGGATCATGGACCTGCTTGTGGTGGTGGAGAACGAAGA
TGTAACTGTTGAGCTAATTCAGGTGAATGAGGATTTGAATAATGCTATCCTTGGATATGAGAGGTTTACT
AGAAACCAACAAAGGATTTTGGAGCAAAATAAGAACCAGAAGGAAGCCACCAATACTACCAGTGAGCCTT
CTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCCCGGATGCCTAGGGCCACTCTGGGAGAACT
CAACACCATGAATAATCAACTTTCAGGCTTAAATTTCAGCCTTCCAAGTTCTGATGTAACAAACAACTTA
AAACCCAGTCTTCATCCACAGATGAACTTGCTAGCCTTGGAGAATACAGAGATACCCCCGTTTGCCCAAA
GGACCAGCCAAAACCTCACCTCAAGCCACGCATATGATAATTTTCTGGAACATTCAAATTCAGTGTTTCT
ACAGCCAGTTAGTCTACAAACCATTGCAGCAGCACCATCAAACCAGAGTCTGCCACCTTTGCCCAGCAAT
CATCCAGCGATGACAAAAAGTGATCTCCAGCCACCTAATTACTACGAGGTAATGGAGTTTGATCCCTTAG
CTCCTGCTGTCACTACAGAAGCTATTTATGAAGAAATTGATGCTCACCAGCACAAAGGAGCTCAAAATGA
TGGTGACTGA

Translation (399 aa):
MCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVKEVYLDLV
KKGVQFPPSEAEAETARQETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIGKLHSELDMVKMNVR
VMSAILMENTPGSENHEDIELLQKLYKTGREMQERIMDLLVVVENEDVTVELIQVNEDLNNAILGYERFT
RNQQRILEQNKNQKEATNTTSEPSAPSQDLLDLSPSPRMPRATLGELNTMNNQLSGLNFSLPSSDVTNNL
KPSLHPQMNLLALENTEIPPFAQRTSQNLTSSHAYDNFLEHSNSVFLQPVSLQTIAAAPSNQSLPPLPSN
HPAMTKSDLQPPNYYEVMEFDPLAPAVTTEAIYEEIDAHQHKGAQNDGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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