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Report for CCDS56341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56341.1 Public Homo sapiens 4 PLRG1 24 110 108 CCDS HistoryNCBI Gene:5356Re-query CCDS DB by CCDS ID:56341.1Re-query CCDS DB by GeneID:5356See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56341.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302078.9 ENSP00000303191.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000302078.9Link to Ensembl Protein Viewer:ENSP00000303191.5Re-query CCDS DB by Nucleotide ID:ENST00000302078Re-query CCDS DB by Protein ID:ENSP00000303191
Original member Current member NCBI NM_001201564.2 NP_001188493.1 Accepted alive Link to Nucleotide Sequence:NM_001201564.2Link to Protein Sequence:NP_001188493.1Re-query CCDS DB by Nucleotide ID:NM_001201564Re-query CCDS DB by Protein ID:NP_001188493Link to BLAST:NP_001188493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188493.1 505 O43660-2 505 100% 0 0

Chromosomal Locations for CCDS 56341.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154536685 154536744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154537286 154537479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154537969 154538108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154539105 154539213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154539951 154540053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154540594 154540695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154540785 154540934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154542187 154542279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154544445 154544546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154545836 154545923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154546123 154546213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154547038 154547064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154547711 154547853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154548829 154548935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154550300 154550308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGTCGAGGAGGTACAGAAACATTCTGTACACACCCTTGTGTTCAGGTCGTTGAAGAGGACCCATGACA
TGTTTGTAGCTGATAATGGAAAACCTGTGCCTTTAGATGAAGAGAGTCACAAACGAAAAATGGCAATCAA
GCTTCGTAATGAGTATGGTCCTGTGTTGCATATGCCTACTTCAAAAGAAAATCTTAAAGAGAAGGGTCCT
CAGAATGCAACGGATTCATATGTTCATAAACAGTACCCTGCCAATCAAGGACAAGAAGTTGAATACTTTG
TGGCAGGGGTTGCTTTGACAGCAGATACTAAGATCCAGAGAATGCCAAGTGAATCAGCTGCACAGTCCTT
AGCGGTGGCATTACCTTTGCAGACCAAGGCTGATGCAAATCGTACTGCCCCTAGTGGAAGTGAATACCGA
CATCCTGGGGCTTCTGACCGTCCACAGCCTACAGCGATGAATTCAATTGTCATGGAGACTGGCAATACCA
AGAACTCTGCACTGATGGCTAAAAAAGCCCCTACAATGCCAAAACCCCAGTGGCACCCACCGTGGAAACT
CTACAGGGTTATCAGTGGGCATCTTGGCTGGGTTCGATGTATTGCTGTGGAACCTGGAAATCAGTGGTTT
GTTACTGGATCTGCTGACAGAACTATAAAGATCTGGGACTTGGCTAGTGGCAAATTAAAACTGTCATTGA
CTGGGCATATTAGTACTGTGCGGGGCGTGATAGTAAGCACAAGGAGCCCATATCTGTTCTCTTGTGGAGA
AGACAAACAAGTGAAATGCTGGGATCTCGAATACAATAAGGTTATACGGCATTATCATGGACATTTAAGT
GCAGTGTATGGTTTGGATTTGCACCCGACAATCGATGTGTTGGTAACCTGTAGTCGAGATTCAACTGCAC
GGATTTGGGATGTGAGAACTAAAGCCAGTGTACACACATTATCTGGACATACAAATGCAGTTGCTACAGT
GAGATGTCAGGCTGCAGAACCACAAATTATTACAGGAAGCCATGATACTACAATTCGATTATGGGATCTG
GTGGCTGGAAAAACAAGAGTGACATTAACAAATCACAAAAAATCAGTTAGGGCTGTGGTTTTACATCCAA
GACATTACACATTTGCATCTGGTTCTCCAGATAACATAAAGCAGTGGAAATTCCCTGATGGAAGTTTCAT
TCAAAATCTTTCCGGTCATAATGCTATTATTAACACATTGACGGTAAATTCTGATGGAGTGCTTGTATCT
GGAGCTGACAATGGCACCATGCATCTTTGGGACTGGAGAACTGGCTACAATTTTCAGAGAGTTCACGCAG
CTGTGCAACCTGGGTCTTTGGACAGTGAATCAGGAATATTTGCTTGTGCTTTTGATCAGTCTGAAAGTCG
ATTACTAACAGCTGAAGCTGATAAAACCATTAAAGTATACAGAGAGGATGACACAGCCACAGAAGAAACT
CATCCAGTCAGCTGGAAACCAGAAATTATCAAGAGAAAGAGATTTTAA

Translation (505 aa):
MVEEVQKHSVHTLVFRSLKRTHDMFVADNGKPVPLDEESHKRKMAIKLRNEYGPVLHMPTSKENLKEKGP
QNATDSYVHKQYPANQGQEVEYFVAGVALTADTKIQRMPSESAAQSLAVALPLQTKADANRTAPSGSEYR
HPGASDRPQPTAMNSIVMETGNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWF
VTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLS
AVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDL
VAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVS
GADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGIFACAFDQSESRLLTAEADKTIKVYREDDTATEET
HPVSWKPEIIKRKRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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