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Report for CCDS72979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72979.1 Public Homo sapiens 1 CCDC181 24 110 108 CCDS HistoryNCBI Gene:57821Re-query CCDS DB by CCDS ID:72979.1Re-query CCDS DB by GeneID:57821See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367806.8 ENSP00000356780.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367806.8Link to Ensembl Protein Viewer:ENSP00000356780.3Re-query CCDS DB by Nucleotide ID:ENST00000367806Re-query CCDS DB by Protein ID:ENSP00000356780
Original member Current member NCBI NM_001300969.2 NP_001287898.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001300969.2Link to Protein Sequence:NP_001287898.1Re-query CCDS DB by Nucleotide ID:NM_001300969Re-query CCDS DB by Protein ID:NP_001287898Link to BLAST:NP_001287898.1
Original member Current member NCBI NM_001394007.1 NP_001380936.1 Accepted alive Link to Nucleotide Sequence:NM_001394007.1Link to Protein Sequence:NP_001380936.1Re-query CCDS DB by Nucleotide ID:NM_001394007Re-query CCDS DB by Protein ID:NP_001380936Link to BLAST:NP_001380936.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287898.1 509 Q5TID7-1 509 100% 0 0
NP_001380936.1 509 Q5TID7-1 509 100% 0 0

Chromosomal Locations for CCDS 72979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169395047 169395206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169397237 169397391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169419013 169419159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169421363 169422313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169424811 169424927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGAATGAAAATAAAGATACTGATTCAAAGAAAAGTGAAGAATACGAAGATGACTTTGAAAAGGACCTGG
AGTGGTTAATTAATGAAAATGAAAAAAGTGATGCCAGCATAATAGAGATGGCTTGTGAGAAGGAAGAGAA
TATTAACCAAGACTTAAAAGAGAATGAGACAGTAATGGAGCACACCAAACGGCATTCTGATCCTGACAAA
TCTTTGCAGGATGAGGTCTCACCAAGAAGAAATGACATCATTTCTGTACCAGGTATTCAACCTTTGGATC
CCATATCAGATTCAGATAGTGAAAACTCTTTCCAGGAATCCAAACTAGAAAGCCAGAAAGACTTGGAGGA
GGAAGAGGATGAGGAAGTAAGGAGATATATTATGGAGAAAATTGTACAAGCTAACAAGCTTCTACAGAAT
CAAGAACCGGTGAATGATAAAAGGGAGCGAAAACTTAAGTTCAAGGACCAGTTAGTTGATTTGGAAGTTC
CTCCACTAGAAGACACTACTACTTTTAAAAATTATTTTGAAAACGAAAGGAATATGTTTGGGAAACTGTC
ACAATTATGTATTTCCAATGATTTTGGACAAGAAGATGTGCTCCTGTCACTTACTAATGGAAGCTGTGAA
GAAAACAAGGATAGGACAATACTGGTAGAGAGAGATGGAAAATTTGAACTTCTGAATTTACAAGACATTG
CCAGTCAGGGGTTTTTGCCTCCCATTAATAATGCAAATAGTACAGAAAATGACCCTCAGCAGTTGTTACC
CAGATCTTCCAACTCCTCTGTCAGTGGCACCAAGAAAGAAGATTCTACAGCAAAGATTCATGCTGTCACT
CACTCATCAACAGGAGAGCCGCTGGCTTATATCGCTCAGCCACCACTCAACCGCAAGACTTGTCCAAGCT
CTGCTGTCAACTCAGATCGAAGTAAAGGGAATGGGAAATCTAATCACAGGACACAGTCTGCACATATCTC
ACCAGTGACTTCAACATACTGTCTTTCCCCTCGACAGAAAGAACTACAAAAACAACTAGAAGAAAAGAGA
GAAAAACTGAAAAGAGAGGAAGAGCGACGAAAAATAGAAGAAGAGAAAGAAAAAAAGAGAGAGAATGACA
TAGTATTTAAAGCGTGGTTGCAAAAGAAAAGAGAGCAGGTCTTAGAAATGAGGAGAATTCAGCGAGCAAA
GGAAATTGAAGACATGAACAGTAGACAGGAAAACAGAGATCCACAACAAGCTTTTCGATTATGGCTTAAA
AAAAAGCACGAAGAGCAGATGAAAGAAAGACAGACAGAAGAACTAAGAAAGCAAGAGGAATGTTTATTCT
TCCTTAAAGGAACAGAAGGCCGGGAAAGGGCCTTTAAACAATGGTTAAGAAGGAAACGGATGGAAAAAAT
GGCAGAGCAACAAGCTGTCAGAGAGAGAACTAGACAGCTCCGACTAGAAGCTAAGCGTTCTAAACAGTTA
CAGCACCACCTATATATGTCAGAAGCCAAACCTTTTCGTTTTACTGATCATTATAACTGA

Translation (509 aa):
MNENKDTDSKKSEEYEDDFEKDLEWLINENEKSDASIIEMACEKEENINQDLKENETVMEHTKRHSDPDK
SLQDEVSPRRNDIISVPGIQPLDPISDSDSENSFQESKLESQKDLEEEEDEEVRRYIMEKIVQANKLLQN
QEPVNDKRERKLKFKDQLVDLEVPPLEDTTTFKNYFENERNMFGKLSQLCISNDFGQEDVLLSLTNGSCE
ENKDRTILVERDGKFELLNLQDIASQGFLPPINNANSTENDPQQLLPRSSNSSVSGTKKEDSTAKIHAVT
HSSTGEPLAYIAQPPLNRKTCPSSAVNSDRSKGNGKSNHRTQSAHISPVTSTYCLSPRQKELQKQLEEKR
EKLKREEERRKIEEEKEKKRENDIVFKAWLQKKREQVLEMRRIQRAKEIEDMNSRQENRDPQQAFRLWLK
KKHEEQMKERQTEELRKQEECLFFLKGTEGRERAFKQWLRRKRMEKMAEQQAVRERTRQLRLEAKRSKQL
QHHLYMSEAKPFRFTDHYN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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