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Report for CCDS2187.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2187.1 Public Homo sapiens 2 ORC4 24 110 108 CCDS HistoryNCBI Gene:5000Re-query CCDS DB by CCDS ID:2187.1Re-query CCDS DB by GeneID:5000See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2187.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264169.6 ENSP00000264169.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264169.6Link to Ensembl Protein Viewer:ENSP00000264169.2Re-query CCDS DB by Nucleotide ID:ENST00000264169Re-query CCDS DB by Protein ID:ENSP00000264169
Original member Current member EBI ENST00000392857.10 ENSP00000376597.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392857.10Link to Ensembl Protein Viewer:ENSP00000376597.5Re-query CCDS DB by Nucleotide ID:ENST00000392857Re-query CCDS DB by Protein ID:ENSP00000376597
Original member Current member EBI ENST00000535373.5 ENSP00000441953.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535373.5Link to Ensembl Protein Viewer:ENSP00000441953.1Re-query CCDS DB by Nucleotide ID:ENST00000535373Re-query CCDS DB by Protein ID:ENSP00000441953
Original member Current member NCBI NM_001190879.3 NP_001177808.1 Accepted alive Link to Nucleotide Sequence:NM_001190879.3Link to Protein Sequence:NP_001177808.1Re-query CCDS DB by Nucleotide ID:NM_001190879Re-query CCDS DB by Protein ID:NP_001177808Link to BLAST:NP_001177808.1
Original member Current member NCBI NM_001374270.1 NP_001361199.1 Accepted alive Link to Nucleotide Sequence:NM_001374270.1Link to Protein Sequence:NP_001361199.1Re-query CCDS DB by Nucleotide ID:NM_001374270Re-query CCDS DB by Protein ID:NP_001361199Link to BLAST:NP_001361199.1
Original member Current member NCBI NM_002552.5 NP_002543.2 Accepted alive Link to Nucleotide Sequence:NM_002552.5Link to Protein Sequence:NP_002543.2Re-query CCDS DB by Nucleotide ID:NM_002552Re-query CCDS DB by Protein ID:NP_002543Link to BLAST:NP_002543.2
Original member Current member NCBI NM_181741.4 NP_859525.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181741.4Link to Protein Sequence:NP_859525.1Re-query CCDS DB by Nucleotide ID:NM_181741Re-query CCDS DB by Protein ID:NP_859525Link to BLAST:NP_859525.1
Original member Current member NCBI NM_181742.4 NP_859526.1 Accepted alive Link to Nucleotide Sequence:NM_181742.4Link to Protein Sequence:NP_859526.1Re-query CCDS DB by Nucleotide ID:NM_181742Re-query CCDS DB by Protein ID:NP_859526Link to BLAST:NP_859526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177808.1 436 O43929-1 436 100% 0 0
NP_001361199.1 436 O43929-1 436 100% 0 0
NP_002543.2 436 O43929-1 436 100% 0 0
NP_859525.1 436 O43929-1 436 100% 0 0
NP_859526.1 436 O43929-1 436 100% 0 0

Chromosomal Locations for CCDS 2187.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 147935510 147935698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147938146 147938213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147938298 147938393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147939140 147939248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147943436 147943522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147948051 147948224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147952373 147952524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147955347 147955395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147958298 147958383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147958791 147958866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147972739 147972829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147973448 147973524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 147975902 147975958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGAGCAGTCGTAAATCAAAGAGTAACAGCTTAATTCACACAGAGTGCCTTTCACAGGTACAAAGAATTT
TACGTGAAAGATTTTGTCGTCAGAGTCCACATAGTAACCTATTTGGAGTGCAAGTACAATACAAACACTT
AAGTGAGCTGCTGAAAAGAACTGCTCTCCATGGAGAGAGTAACTCTGTCCTTATTATCGGACCCCGAGGA
TCAGGAAAAACTATGTTAATAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGAAGTGAGTGAAAATG
TATTACAAGTTCACTTAAATGGACTGCTGCAGATCAATGACAAAATCGCCCTAAAGGAAATCACAAGGCA
GTTAAATCTGGAAAATGTAGTTGGAGATAAAGTTTTTGGAAGCTTTGCTGAAAACCTTTCATTTCTTCTG
GAAGCTTTAAAAAAAGGTGACCGAACTAGCAGTTGCCCAGTGATCTTCATATTAGATGAATTTGATCTTT
TTGCTCATCATAAAAACCAAACACTTCTCTATAATCTTTTTGACATTTCTCAGTCTGCACAGACCCCAAT
AGCAGTTATTGGTCTTACATGTAGATTGGATATTTTGGAACTCTTAGAAAAAAGAGTGAAGTCAAGATTT
TCTCACCGGCAGATACACTTAATGAATTCATTTGGTTTTCCACAGTATGTTAAAATATTTAAAGAACAGT
TATCTCTACCTGCAGAGTTTCCAGACAAGGTTTTTGCTGAGAAGTGGAATGAAAATGTTCAGTATCTCTC
AGAAGATAGAAGTGTGCAAGAAGTACTACAGAAGCATTTCAATATCAGCAAAAACCTGCGGTCATTACAC
ATGCTATTGATGCTTGCTTTAAATCGAGTAACAGCATCGCACCCATTTATGACTGCCGTAGATCTAATGG
AAGCAAGCCAACTGTGTAGCATGGACTCGAAAGCAAATATTGTACATGGTCTATCAGTCTTGGAAATCTG
TCTTATAATAGCAATGAAACATTTAAATGACATCTATGAGGAAGAGCCATTTAATTTTCAAATGGTCTAT
AATGAGTTTCAGAAGTTTGTTCAAAGGAAAGCACATTCCGTTTATAATTTTGAAAAACCTGTTGTCATGA
AGGCTTTTGAACACTTGCAGCAATTAGAATTAATAAAGCCCATGGAAAGAACTTCAGGAAATTCACAGAG
AGAGTACCAGCTGATGAAACTGCTTTTGGATAATACTCAAATTATGAATGCTCTGCAGAAATATCCCAAC
TGTCCTACAGATGTGAGGCAGTGGGCAACATCCTCACTAAGCTGGTTATGA

Translation (436 aa):
MSSRKSKSNSLIHTECLSQVQRILRERFCRQSPHSNLFGVQVQYKHLSELLKRTALHGESNSVLIIGPRG
SGKTMLINHALKELMEIEEVSENVLQVHLNGLLQINDKIALKEITRQLNLENVVGDKVFGSFAENLSFLL
EALKKGDRTSSCPVIFILDEFDLFAHHKNQTLLYNLFDISQSAQTPIAVIGLTCRLDILELLEKRVKSRF
SHRQIHLMNSFGFPQYVKIFKEQLSLPAEFPDKVFAEKWNENVQYLSEDRSVQEVLQKHFNISKNLRSLH
MLLMLALNRVTASHPFMTAVDLMEASQLCSMDSKANIVHGLSVLEICLIIAMKHLNDIYEEEPFNFQMVY
NEFQKFVQRKAHSVYNFEKPVVMKAFEHLQQLELIKPMERTSGNSQREYQLMKLLLDNTQIMNALQKYPN
CPTDVRQWATSSLSWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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