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Report for CCDS93963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93963.1 Public Homo sapiens 6 SNX14 24 110 108 CCDS HistoryNCBI Gene:57231Re-query CCDS DB by CCDS ID:93963.1Re-query CCDS DB by GeneID:57231See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000682682.1 ENSP00000507777.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000682682.1Link to Ensembl Protein Viewer:ENSP00000507777.1Re-query CCDS DB by Nucleotide ID:ENST00000682682Re-query CCDS DB by Protein ID:ENSP00000507777
Original member Current member NCBI NM_001350540.2 NP_001337469.1 Accepted alive Link to Nucleotide Sequence:NM_001350540.2Link to Protein Sequence:NP_001337469.1Re-query CCDS DB by Nucleotide ID:NM_001350540Re-query CCDS DB by Protein ID:NP_001337469Link to BLAST:NP_001337469.1

Chromosomal Locations for CCDS 93963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85505967 85506005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85507233 85507289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85507968 85508059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85513800 85513895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85514506 85514629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85517756 85517875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85518008 85518048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85526126 85526237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85528262 85528362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85530192 85530275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85533599 85533800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85536792 85536924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85538838 85538864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85541985 85542043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85543182 85543306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85543605 85543760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547112 85547226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547317 85547397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85547506 85547550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85548301 85548376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85549723 85549879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85557976 85558060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85565332 85565419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85567534 85567577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85572137 85572215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85572298 85572374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85574258 85574378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 85593579 85593718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2676 nt):
ATGGTGCCCTGGGTGCGGACGATGGGGCAGAAGCTGAAGCAGCGGCTGCGACTGGACGTGGGACGCGAGA
TCTGCCGCCAGTACCCGCTGTTCTGCTTCCTGCTGCTCTGTCTCAGCGCCGCCTCCCTGCTTCTTAACAG
GTATATTCATATTTTAATGATCTTCTGGTCATTTGTTGCTGGAGTTGTCACATTCTACTGCTCACTAGGA
CCTGATTCTCTCTTACCAAATATATTCTTCACAATAAAATACAAACCCAAGCAGTTAGGACTTCAGGAAT
TATTTCCTCAAGGTCATAGCTGTGCTGTTTGTGGTAAAGTGAAATGTAAACGACATAGGCCTTCTTTGCT
ACTTGAAAACTACCAGCCATGGCTAGACCTGAAAATTTCTTCCAAGGTTGATGCATCTCTCTCAGAGGTT
CTTGAATTAGTGTTGGAAAACTTTGTTTATCCGTGGTACAGGGATGTGACAGATGATGAATCCTTTGTTG
ATGAACTGAGAATAACATTACGTTTTTTTGCATCTGTCTTAATAAGAAGGATTCACAAGGTGGATATTCC
ATCTATTATAACCAAGAAACTATTAAAAGCAGCAATGAAGCATATAGAAGTGATAGTTAAAGCCAGACAG
AAAGTAAAAAATACAGAGTTTTTACAGCAAGCTGCTTTAGAAGAATATGGTCCAGAGCTTCATGTTGCTT
TGAGAAGTCGAAGAGATGAATTGCACTATTTAAGGAAACTTACTGAACTGCTTTTTCCTTATATTTTGCC
TCCTAAAGCAACAGACTGCAGATCTCTGACCTTACTTATAAGAGAGATTCTGTCTGGCTCTGTGTTCCTT
CCTTCTTTGGATTTCCTAGCTGATCCAGATACTGTGAATCATTTGCTTATCATCTTCATAGATGACAGTC
CACCTGAAAAAGCAACTGAACCGGCTTCTCCTTTGGTTCCATTCTTGCAGAAATTTGCAGAACCTAGAAA
TAAAAAGCCATCTGTGCTGAAGTTAGAATTGAAGCAAATCAGAGAGCAACAAGATCTTTTATTTCGTTTT
ATGAACTTTCTGAAACAAGAAGGCGCAGTGCACGTGTTGCAGTTTTGTTTGACTGTGGAGGAATTTAATG
ATAGAATTTTACGACCAGAATTATCAAATGATGAAATGCTGTCTCTTCATGAAGAATTGCAGAAGATTTA
TAAAACATACTGTTTGGATGAAAGTATTGACAAAATTAGATTTGATCCCTTCATTGTAGAAGAGATTCAA
AGAATTGCTGAAGGCCCATACATAGATGTTGTGAAACTTCAAACTATGAGATGTCTTTTTGAAGCATATG
AACATGTTCTTTCCCTTTTGGAGAATGTATTTACTCCTATGTTCTGCCATAGTGATGAGTATTTCAGACA
ACTTTTAAGAGGTGCAGAATCACCAACACGCAATTCAAAATTGAACAGAGGTAGCCTAAGTTTGGATGAT
TTTCGGAACACACAGAAAAGGGGAGAATCATTTGGAATCAGCAGAATAGGTAGCAAAATTAAAGGAGTAT
TCAAAAGTACCACAATGGAGGGAGCTATGTTGCCTAATTATGGTGTAGCTGAAGGTGAAGATGATTTTAT
TGAAGAAGGTATTGTTGTAATGGAAGATGATTCTCCAGTGGAGGCTGTGAGCACACCTAATACTCCCCGA
AACCTTGCTGCATGGAAAATTAGCATTCCATATGTAGACTTTTTTGAGGATCCCTCCTCTGAAAGGAAGG
AGAAAAAAGAAAGAATTCCTGTGTTTTGTATTGATGTTGAAAGAAATGATAGAAGAGCAGTTGGACACGA
GCCTGAACATTGGTCTGTCTATAGAAGATATCTTGAATTCTATGTACTTGAATCAAAACTAACAGAATTT
CATGGTGCATTTCCTGATGCCCAGCTTCCTTCTAAGAGGATCATTGGCCCCAAAAATTATGAATTCTTAA
AGTCAAAGAGGGAAGAGTTCCAAGAATATCTACAGAAACTTCTGCAGCATCCAGAACTGAGTAATAGTCA
ACTTCTGGCAGACTTTCTTTCCCCTAATGGTGGGGAAACACAATTTCTTGATAAGATACTACCAGATGTA
AATCTTGGGAAAATTATAAAATCTGTTCCTGGAAAACTAATGAAAGAGAAAGGTCAGCATTTGGAACCTT
TTATCATGAATTTCATTAATTCTTGTGAGTCTCCAAAGCCTAAACCAAGTAGACCAGAACTGACCATTCT
CAGCCCTACTTCAGAAAACAACAAGAAGCTTTTCAATGATCTGTTTAAAAATAATGCAAACCGTGCTGAA
AATACAGAGAGAAAGCAAAATCAGAATTATTTTATGGAGGTGATGACTGTAGAAGGAGTCTATGATTACC
TGATGTATGTAGATGCTATATTCTGTGAAAACACTGAACCTCGCTCTCTCCAAGATAAGCAAAAAGGAGC
AAAACAGACTTTTGAAGAAATGATGAATTACATTCCAGATCTGTTAGTCAAGTGTATTGGTGAAGAAACC
AAGTATGAAAGCATCAGACTTCTGTTTGATGGCTTACAGCAACCAGTACTCAACAAGCAGCTGACTTATG
TTTTATTGGACATTGTGATACAGGAACTGTTTCCAGAGCTCAATAAGGTACAAAAGGAAGTTACCTCTGT
GACATCTTGGATGTAA

Translation (891 aa):
MVPWVRTMGQKLKQRLRLDVGREICRQYPLFCFLLLCLSAASLLLNRYIHILMIFWSFVAGVVTFYCSLG
PDSLLPNIFFTIKYKPKQLGLQELFPQGHSCAVCGKVKCKRHRPSLLLENYQPWLDLKISSKVDASLSEV
LELVLENFVYPWYRDVTDDESFVDELRITLRFFASVLIRRIHKVDIPSIITKKLLKAAMKHIEVIVKARQ
KVKNTEFLQQAALEEYGPELHVALRSRRDELHYLRKLTELLFPYILPPKATDCRSLTLLIREILSGSVFL
PSLDFLADPDTVNHLLIIFIDDSPPEKATEPASPLVPFLQKFAEPRNKKPSVLKLELKQIREQQDLLFRF
MNFLKQEGAVHVLQFCLTVEEFNDRILRPELSNDEMLSLHEELQKIYKTYCLDESIDKIRFDPFIVEEIQ
RIAEGPYIDVVKLQTMRCLFEAYEHVLSLLENVFTPMFCHSDEYFRQLLRGAESPTRNSKLNRGSLSLDD
FRNTQKRGESFGISRIGSKIKGVFKSTTMEGAMLPNYGVAEGEDDFIEEGIVVMEDDSPVEAVSTPNTPR
NLAAWKISIPYVDFFEDPSSERKEKKERIPVFCIDVERNDRRAVGHEPEHWSVYRRYLEFYVLESKLTEF
HGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSNSQLLADFLSPNGGETQFLDKILPDV
NLGKIIKSVPGKLMKEKGQHLEPFIMNFINSCESPKPKPSRPELTILSPTSENNKKLFNDLFKNNANRAE
NTERKQNQNYFMEVMTVEGVYDYLMYVDAIFCENTEPRSLQDKQKGAKQTFEEMMNYIPDLLVKCIGEET
KYESIRLLFDGLQQPVLNKQLTYVLLDIVIQELFPELNKVQKEVTSVTSWM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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