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Report for CCDS54200.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54200.1 Public Homo sapiens 19 MPND 24 110 108 CCDS HistoryNCBI Gene:84954Re-query CCDS DB by CCDS ID:54200.1Re-query CCDS DB by GeneID:84954See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54200.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359935.8 ENSP00000353015.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359935.8Link to Ensembl Protein Viewer:ENSP00000353015.3Re-query CCDS DB by Nucleotide ID:ENST00000359935Re-query CCDS DB by Protein ID:ENSP00000353015
Original member Current member NCBI NM_001159846.3 NP_001153318.1 Accepted alive Link to Nucleotide Sequence:NM_001159846.3Link to Protein Sequence:NP_001153318.1Re-query CCDS DB by Nucleotide ID:NM_001159846Re-query CCDS DB by Protein ID:NP_001153318Link to BLAST:NP_001153318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153318.1 451 Q8N594-2 451 100% 0 0

Chromosomal Locations for CCDS 54200.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4343594 4343600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4343708 4343994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4345745 4345981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4352897 4353029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4354045 4354129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4354324 4354420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4357253 4357421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4357515 4357585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4358083 4358172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4359163 4359255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4359916 4360002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGGCAGCTCCGGAGCCGCTGTCCCCGGCGGGCGGTGCGGGCGAGGAGGCGCCGGAGGAGGACGAGGACG
AAGCGGAGGCCGAGGACCCTGAGCGGCCGAATGCGGGAGCGGGCGGTGGACGCAGTGGCGGCGGCGGCAG
TAGCGTCAGCGGAGGAGGCGGCGGCGGCGGGGCCGGGGCGGGGGGCTGCGGCGGGCCCGGGGGCGCGCTC
ACCAGGCGCGCGGTCACACTGCGGGTGCTCCTCAAAGACGCGCTGCTGGAGCCTGGCGCCGGGGTGCTGT
CCATCTACTACCTGGGGAAGAAGTTCCTGGGCGACCTGCAGCCAGACGGAAGGATCATGTGGCAGGAGAC
CGGGCAGACCTTCAACTCACCCAGCGCCTGGGCCACCCACTGCAAGAAGCTGGTGAACCCTGCCAAGAAG
TCGGGCTGTGGCTGGGCCTCTGTCAAGTACAAAGGCCAGAAACTGGACAAGTACAAGGCCACCTGGCTCC
GGCTGCACCAGCTGCACACGCCTGCCACGGCTGCTGATGAGAGCCCAGCCAGTGAAGGGGAGGAGGAGGA
GTTGCTGATGGAAGAGGAGGAGGAGGACGTTCTGGCAGGGGTCTCAGCAGAGGACAAGAGTCGGAGACCA
CTGGGGAAGAGCCCTTCAGAGCCTGCCCACCCGGAGGCCACAACCCCAGGGAAGCGGGTGGACAGCAAGA
TCCGGGTTCCGGTCCGCTACTGCATGCTGGGCAGCCGCGACTTGGCCAGGAACCCCCACACCCTGGTGGA
AGTAACATCCTTTGCAGCCATCAACAAGTTCCAGCCGTTCAACGTGGCTGTTTCTAGCAACGTGCTGTTC
CTGCTGATCTACCAGAGCCTGTTCCTGCGGGGCCTGTCCCTGGTGGGCTGGTACCACAGCCACCCACACA
GCCCGGCGCTGCCATCTCTGCAGGACATCGACGCACAGATGGACTACCAGCTGCGGCTGCAGGGCTCCAG
CAATGGCTTCCAGCCCTGCCTCGCCCTGCTCTGCTCCCCTTACTATTCTGGCAACCCAGGCCCCGAGTCC
AAGATCTCACCTTTCTGGGTGATGCCTCCTCCCGAGCAAAGGCCCAGTGACTATGGCATCCCCATGGATG
TGGAGATGGCCTACGTCCAGGACAGCTTCCTGACCAATGACATCCTTCACGAGATGATGCTGCTGGTGGA
GTTCTACAAGGGTTCCCCTGACCTCGTGAGGCTCCAGGAACCCTGGAGCCAGGAGCACACCTACCTCGAC
AAGCTTAAGATCTCCTTGGCCAGCAGGACGCCCAAGGACCAGAGCCTGTGTCACGTCCTGGAACAGGTGT
GCGGCGTCCTCAAGCAGGGGAGCTGA

Translation (451 aa):
MAAPEPLSPAGGAGEEAPEEDEDEAEAEDPERPNAGAGGGRSGGGGSSVSGGGGGGGAGAGGCGGPGGAL
TRRAVTLRVLLKDALLEPGAGVLSIYYLGKKFLGDLQPDGRIMWQETGQTFNSPSAWATHCKKLVNPAKK
SGCGWASVKYKGQKLDKYKATWLRLHQLHTPATAADESPASEGEEEELLMEEEEEDVLAGVSAEDKSRRP
LGKSPSEPAHPEATTPGKRVDSKIRVPVRYCMLGSRDLARNPHTLVEVTSFAAINKFQPFNVAVSSNVLF
LLIYQSLFLRGLSLVGWYHSHPHSPALPSLQDIDAQMDYQLRLQGSSNGFQPCLALLCSPYYSGNPGPES
KISPFWVMPPPEQRPSDYGIPMDVEMAYVQDSFLTNDILHEMMLLVEFYKGSPDLVRLQEPWSQEHTYLD
KLKISLASRTPKDQSLCHVLEQVCGVLKQGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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