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Report for CCDS73208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73208.1 Public Homo sapiens 10 SHTN1 24 110 108 CCDS HistoryNCBI Gene:57698Re-query CCDS DB by CCDS ID:73208.1Re-query CCDS DB by GeneID:57698See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392903.3 ENSP00000376636.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392903.3Link to Ensembl Protein Viewer:ENSP00000376636.3Re-query CCDS DB by Nucleotide ID:ENST00000392903Re-query CCDS DB by Protein ID:ENSP00000376636
Original member Current member NCBI NM_001258299.2 NP_001245228.1 Accepted alive Link to Nucleotide Sequence:NM_001258299.2Link to Protein Sequence:NP_001245228.1Re-query CCDS DB by Nucleotide ID:NM_001258299Re-query CCDS DB by Protein ID:NP_001245228Link to BLAST:NP_001245228.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245228.1 558 A0MZ66-4 558 100% 0 0

Chromosomal Locations for CCDS 73208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116900537 116900540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116901765 116901957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116906627 116906747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116911790 116911843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116915375 116915484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116921434 116921516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116927792 116927891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116929849 116930002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116940466 116940612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116944924 116945018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116948916 116948997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116951909 116952006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116954042 116954210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116960136 116960230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116968652 116968712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116979256 116979308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117005022 117005079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGAACAGCTCGGACGAAGAGAAGCAGCTGCAGCTCATTACCAGTCTGAAGGAGCAAGCAATAGGCGAAT
ATGAAGACCTTAGAGCAGAGAACCAGAAAACAAAGGAGAAGTGTGACAAAATTAGGCAAGAACGAGATGA
AGCCGTTAAAAAACTGGAAGAATTTCAGAAAATTTCTCACATGGTCATAGAGGAAGTTAATTTCATGCAG
AACCATCTTGAAATAGAGAAGACTTGTCGAGAAAGTGCTGAAGCTTTGGCAACAAAGCTAAATAAAGAAA
ATAAAACGTTGAAAAGAATCAGCATGTTGTACATGGCCAAGCTGGGACCAGATGTAATAACTGAAGAGAT
AAACATTGATGATGAAGATTCGACTACAGACACAGACGGTGCCGCCGAGACTTGTGTCTCAGTACAGTGT
CAGAAGCAAATTAAAGAACTTCGAGATCAAATTGTATCTGTTCAGGAGGAAAAGAAGATTTTAGCCATTG
AGCTGGAAAATCTCAAGAGCAAACTCGTAGAAGTAATTGAAGAAGTAAATAAAGTTAAACAAGAAAAGAC
TGTTTTAAATTCAGAAGTTCTTGAACAGAGAAAAGTCTTAGAAAAATGCAATAGAGTGTCCATGTTAGCT
GTAGAAGAGTATGAGGAGATGCAAGTAAACCTGGAGCTGGAGAAGGACCTTCGAAAGAAAGCAGAGTCAT
TTGCACAAGAGATGTTCATTGAGCAAAACAAGCTAAAGAGACAAAGCCACCTTCTGCTGCAGAGCTCCAT
CCCTGATCAGCAGCTTTTGAAAGCTTTAGACGAAAATGCAAAACTCACCCAGCAACTTGAAGAAGAGAGA
ATTCAGCATCAACAAAAGGTCAAAGAATTAGAAGAGCAACTAGAAAATGAAACACTCCACAAAGAAATAC
ACAACCTCAAACAGCAACTGGAGCTTCTAGAGGAAGATAAAAAGGAATTGGAATTGAAATATCAGAATTC
TGAAGAGAAAGCCAGAAATTTAAAGCACTCTGTTGATGAACTCCAGAAACGAGTGAACCAGTCTGAGAAT
TCAGTACCTCCACCACCTCCTCCTCCACCACCACTTCCCCCTCCACCTCCCAATCCTATCCGATCCCTCA
TGTCCATGATCCGGAAACGATCCCACCCCAGTGGCAGTGGTGCTAAGAAAGAAAAGGCAACTCAACCAGA
AACAACTGAAGAAGTCACAGATCTAAAGAGGCAAGCAGTTGAAGAGATGATGGATAGAATTAAAAAGGGA
GTTCATCTTAGACCCGTTAATCAGACAGCCAGACCGAAGACAAAGCCAGAATCTTCGAAAGGCTGCGAAA
GTGCAGTGGATGAACTAAAAGGAATACTGGGGACACTTAACAAATCCACTAGTTCAAGAAGCTTAAAATC
CCTTGACCCTGAAAACAGTGAAACTGAGTTAGAAAGGATTTTGCGTCGCAGAAAGGTGACAGCAGAAGCA
GATAGCAGTAGTCCAACTGGGATATTAGCCACCTCAGAGTCCAAATCCATGCCAGTGTTGGGTTCTGTAT
CCAGTGTAACAAAAACAGCCTTGAACAAGAAAACTCTGGAGGCAGAATTCAACAGCCCGTCCCCCCCAAC
ACCTGAGCCAGGTGAAGGGCCCCGTAAATTGGAAGGATGCACAAGTTCCAAGGTTACGTTTCAATAA

Translation (558 aa):
MNSSDEEKQLQLITSLKEQAIGEYEDLRAENQKTKEKCDKIRQERDEAVKKLEEFQKISHMVIEEVNFMQ
NHLEIEKTCRESAEALATKLNKENKTLKRISMLYMAKLGPDVITEEINIDDEDSTTDTDGAAETCVSVQC
QKQIKELRDQIVSVQEEKKILAIELENLKSKLVEVIEEVNKVKQEKTVLNSEVLEQRKVLEKCNRVSMLA
VEEYEEMQVNLELEKDLRKKAESFAQEMFIEQNKLKRQSHLLLQSSIPDQQLLKALDENAKLTQQLEEER
IQHQQKVKELEEQLENETLHKEIHNLKQQLELLEEDKKELELKYQNSEEKARNLKHSVDELQKRVNQSEN
SVPPPPPPPPPLPPPPPNPIRSLMSMIRKRSHPSGSGAKKEKATQPETTEEVTDLKRQAVEEMMDRIKKG
VHLRPVNQTARPKTKPESSKGCESAVDELKGILGTLNKSTSSRSLKSLDPENSETELERILRRRKVTAEA
DSSSPTGILATSESKSMPVLGSVSSVTKTALNKKTLEAEFNSPSPPTPEPGEGPRKLEGCTSSKVTFQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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