NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS62886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62886.1 Public Homo sapiens 2 SUPT7L 24 110 108 CCDS HistoryNCBI Gene:9913Re-query CCDS DB by CCDS ID:62886.1Re-query CCDS DB by GeneID:9913See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 62886.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404798.6 ENSP00000385218.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404798.6Link to Ensembl Protein Viewer:ENSP00000385218.2Re-query CCDS DB by Nucleotide ID:ENST00000404798Re-query CCDS DB by Protein ID:ENSP00000385218
Original member Current member NCBI NM_001282732.2 NP_001269661.1 Accepted alive Link to Nucleotide Sequence:NM_001282732.2Link to Protein Sequence:NP_001269661.1Re-query CCDS DB by Nucleotide ID:NM_001282732Re-query CCDS DB by Protein ID:NP_001269661Link to BLAST:NP_001269661.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269661.1 279 O94864-4 279 100% 0 0

Chromosomal Locations for CCDS 62886.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27653485 27653747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27655365 27655602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27657345 27657669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27662179 27662192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGAATCTGCAAAGTGGGAAAGGGGAACCTGTGACTGAACTCAGCTGGCACTCCTGTCGGCAGCTCCTCT
ACCAGGCAGTGGCCACAATCCTGGCCCACGCGGGCTTTGACTGTGCTAATGAGAGTGTCCTGGAGACCCT
AACTGATGTGGCACATGAGTATTGCCTTAAGTTTACCAAGTTGCTGCGTTTTGCTGTGGACCGGGAGGCC
CGGCTGGGACAGACTCCTTTTCCTGATGTGATGGAGCAGGTATTCCATGAAGTGGGTATTGGCAGTGTGC
TCTCCCTCCAGAAGTTCTGGCAGCACCGCATCAAGGACTATCACAGTTACATGCTACAGATTAGTAAGCA
ACTCTCTGAAGAATATGAAAGGATTGTCAATCCTGAGAAGGCCACAGAGGACGCTAAACCTGTGAAGATC
AAGGAGGAACCTGTGAGCGACATCACTTTTCCTGTCAGTGAGGAGCTGGAGGCTGACCTTGCTTCTGGAG
ACCAGTCACTGCCTATGGGAGTGCTTGGGGCTCAGAGCGAACGCTTCCCATCTAACCTGGAGGTTGAAGC
TTCACCACAGGCTTCAAGTGCAGAGGTAAATGCTTCTCCTCTTTGGAATCTGGCCCATGTGAAAATGGAG
CCTCAAGAAAGTGAAGAAGGCAATGTCTCTGGGCATGGTGTGCTGGGCAGTGATGTCTTCGAGGAGCCTA
TGTCAGGCATGAGTGAAGCTGGGATTCCTCAGAGCCCTGATGACTCAGATAGCAGCTATGGTTCCCACTC
CACTGACAGCCTCATGGGGTCCTCCCCTGTTTTCAACCAGCGCTGCAAGAAGAGGATGAGGAAAATATAA

Translation (279 aa):
MNLQSGKGEPVTELSWHSCRQLLYQAVATILAHAGFDCANESVLETLTDVAHEYCLKFTKLLRFAVDREA
RLGQTPFPDVMEQVFHEVGIGSVLSLQKFWQHRIKDYHSYMLQISKQLSEEYERIVNPEKATEDAKPVKI
KEEPVSDITFPVSEELEADLASGDQSLPMGVLGAQSERFPSNLEVEASPQASSAEVNASPLWNLAHVKME
PQESEEGNVSGHGVLGSDVFEEPMSGMSEAGIPQSPDDSDSSYGSHSTDSLMGSSPVFNQRCKKRMRKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH