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Report for CCDS41366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41366.1 Public Homo sapiens 1 LRIF1 24 110 108 CCDS HistoryNCBI Gene:55791Re-query CCDS DB by CCDS ID:41366.1Re-query CCDS DB by GeneID:55791See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000485275.2 ENSP00000432290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485275.2Link to Ensembl Protein Viewer:ENSP00000432290.1Re-query CCDS DB by Nucleotide ID:ENST00000485275Re-query CCDS DB by Protein ID:ENSP00000432290
Original member Current member EBI ENST00000494675.5 ENSP00000435259.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494675.5Link to Ensembl Protein Viewer:ENSP00000435259.1Re-query CCDS DB by Nucleotide ID:ENST00000494675Re-query CCDS DB by Protein ID:ENSP00000435259
Original member Current member NCBI NM_001006945.2 NP_001006946.1 Accepted alive Link to Nucleotide Sequence:NM_001006945.2Link to Protein Sequence:NP_001006946.1Re-query CCDS DB by Nucleotide ID:NM_001006945Re-query CCDS DB by Protein ID:NP_001006946Link to BLAST:NP_001006946.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006946.1 233 Q5T3J3-2 233 100% 0 0

Chromosomal Locations for CCDS 41366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110947959 110948399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 110949851 110950111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGCATCAACATCAGATAAAGGTGCCCAAGGAAGAAATGACAAGAAAGATTCTCAAGGAAGAAGTAATA
AGGCATTACATCTGAAGAGTGATGCTGAATTTAAAAAGATATTTGGCCTTACTAAGGATTTGAGAGTGTG
CCTTACTCGAATTCCTGACCATTTGACCTCTGGAGAAGGTTTCGATTCCTTTAGCAGTTTGGTAAAGAGT
GGTACTTACAAAGAGACAGAGTTTATGGTGAAGGAAGGAGAGAGAAAACAGCAGAATTTTGATAAGAAAA
GAAAAGCAAAAACTAATAAGAAGATGGATCACATAAAGAAGAGAAAAACAGAGAATGCTTATAACGCAAT
CATAAATGGGGAAGCTAATGTCACCGGTTCCCAACTCCTAAGCAGTATTTTACCAACTTCAGATGTGTCA
CAACATAACATTCTCACGAGTCACAGCAAAACCAGACAAGAAAAGAGAACTGAGATGGAATACTATACCC
ATGAGAAGCAAGAGAAAGGCACTTTGAATTCAAATGCAGCTTATGAACAAAGTCATTTCTTCAATAAAAA
TTATACCGAAGATATTTTCCCAGTGACACCACCGGAGTTAGAAGAAACCATTCGAGATGAAAAAATAAGA
AGACTTAAGCAGGTGCTGAGAGAGAAAGAAGCAGCTCTTGAAGAAATGCGTAAGAAGATGCACCAAAAAT
AA

Translation (233 aa):
MASTSDKGAQGRNDKKDSQGRSNKALHLKSDAEFKKIFGLTKDLRVCLTRIPDHLTSGEGFDSFSSLVKS
GTYKETEFMVKEGERKQQNFDKKRKAKTNKKMDHIKKRKTENAYNAIINGEANVTGSQLLSSILPTSDVS
QHNILTSHSKTRQEKRTEMEYYTHEKQEKGTLNSNAAYEQSHFFNKNYTEDIFPVTPPELEETIRDEKIR
RLKQVLREKEAALEEMRKKMHQK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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