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Report for CCDS41312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41312.1 Public Homo sapiens 1 PPCS 24 110 108 CCDS HistoryNCBI Gene:79717Re-query CCDS DB by CCDS ID:41312.1Re-query CCDS DB by GeneID:79717See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372562.1 ENSP00000361643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372562.1Link to Ensembl Protein Viewer:ENSP00000361643.1Re-query CCDS DB by Nucleotide ID:ENST00000372562Re-query CCDS DB by Protein ID:ENSP00000361643
Original member Current member NCBI NM_001077447.3 NP_001070915.1 Accepted alive Link to Nucleotide Sequence:NM_001077447.3Link to Protein Sequence:NP_001070915.1Re-query CCDS DB by Nucleotide ID:NM_001077447Re-query CCDS DB by Protein ID:NP_001070915Link to BLAST:NP_001070915.1
Original member Current member NCBI NM_001287506.1 NP_001274435.1 Accepted alive Link to Nucleotide Sequence:NM_001287506.1Link to Protein Sequence:NP_001274435.1Re-query CCDS DB by Nucleotide ID:NM_001287506Re-query CCDS DB by Protein ID:NP_001274435Link to BLAST:NP_001274435.1
Original member Current member NCBI NM_001287508.2 NP_001274437.1 Accepted alive Link to Nucleotide Sequence:NM_001287508.2Link to Protein Sequence:NP_001274437.1Re-query CCDS DB by Nucleotide ID:NM_001287508Re-query CCDS DB by Protein ID:NP_001274437Link to BLAST:NP_001274437.1
Original member Current member NCBI NM_001287509.2 NP_001274438.1 Accepted alive Link to Nucleotide Sequence:NM_001287509.2Link to Protein Sequence:NP_001274438.1Re-query CCDS DB by Nucleotide ID:NM_001287509Re-query CCDS DB by Protein ID:NP_001274438Link to BLAST:NP_001274438.1
Original member Current member NCBI NM_001287510.2 NP_001274439.1 Accepted alive Link to Nucleotide Sequence:NM_001287510.2Link to Protein Sequence:NP_001274439.1Re-query CCDS DB by Nucleotide ID:NM_001287510Re-query CCDS DB by Protein ID:NP_001274439Link to BLAST:NP_001274439.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070915.1 138 Q9HAB8-2 138 100% 0 0
NP_001274435.1 138 Q9HAB8-2 138 100% 0 0
NP_001274437.1 138 Q9HAB8-2 138 100% 0 0
NP_001274438.1 138 Q9HAB8-2 138 100% 0 0
NP_001274439.1 138 Q9HAB8-2 138 100% 0 0

Chromosomal Locations for CCDS 41312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 42457258 42457350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 42459603 42459926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGTTTTACCTGGCTGCGGCTGTGTCAGATTTCTATGTTCCTGTCTCTGAAATGCCTGAACACAAGATCC
AGTCATCTGGGGGCCCACTGCAGATAACAATGAAGATGGTGCCAAAACTGCTTTCTCCTTTGGTTAAAGA
TTGGGCTCCCAAAGCATTTATAATTTCCTTTAAGTTGGAGACTGACCCCGCCATTGTAATTAATCGAGCT
CGGAAGGCTTTGGAAATTTATCAGCATCAAGTGGTGGTGGCTAATATCCTTGAGTCACGACAGTCCTTTG
TGTTTATTGTAACCAAAGACTCGGAAACCAAGTTATTGCTATCAGAGGAAGAAATAGAAAAAGGCGTAGA
GATAGAAGAGAAGATAGTGGATAATCTTCAGTCTCGACACACAGCTTTTATAGGTGACAGAAACTGA

Translation (138 aa):
MFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRA
RKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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