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Report for CCDS3404.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3404.1 Public Homo sapiens 4 CPZ 24 110 108 CCDS HistoryNCBI Gene:8532Re-query CCDS DB by CCDS ID:3404.1Re-query CCDS DB by GeneID:8532See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3404.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000315782.6 ENSP00000315074.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000315782.6Link to Ensembl Protein Viewer:ENSP00000315074.6Re-query CCDS DB by Nucleotide ID:ENST00000315782Re-query CCDS DB by Protein ID:ENSP00000315074
Original member Current member NCBI NM_003652.4 NP_003643.3 Accepted alive Link to Nucleotide Sequence:NM_003652.4Link to Protein Sequence:NP_003643.3Re-query CCDS DB by Nucleotide ID:NM_003652Re-query CCDS DB by Protein ID:NP_003643Link to BLAST:NP_003643.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003643.3 641 Q66K79-2 641 100% 0 0

Chromosomal Locations for CCDS 3404.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 8592834 8592921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8601123 8601497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8603976 8604188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8605989 8606185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8606737 8606898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8607267 8607425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8612027 8612162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8614359 8614498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8618429 8618528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 8619262 8619617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGCCGCCCCCGCTGCCGCTGCTGCTCCTTACAGTCCTGGTCGTCGCCGCTGCCCGGCCGGGGTGCGAGT
TTGAGCGGAACCCCGCCGCCACCTGCGTGGACCTGCAGCTCAGGACCTGCAGCGATGCCGCCTACAACCA
CACCACCTTCCCCAACCTGCTTCAGCACCGGTCGTGGGAGGTGGTGGAGGCCAGCTCCGAGTACATCCTG
CTGAGCGTTCTACACCAGCTCCTGGAAGGCCAGTGCAACCCGGACCTGCGGCTGCTGGGCTGTGCTGTGC
TGGCCCCCCGGTGTGAGGGCGGCTGGGTGCGCAGACCCTGCCGGCACATCTGCGAGGGCCTGCGGGAGGT
CTGCCAGCCCGCCTTCGACGCCATTGACATGGCCTGGCCCTACTTCCTTGACTGCCACCGCTACTTCACG
AGAGAGGACGAGGGCTGCTATGACCCGCTGGAGAAGCTTCGGGGAGGCCTGGAGGCTGACGAGGCACTGC
CCTCAGGGCTGCCGCCCACCTTCATCCGCTTCAGCCACCACTCCTACGCCCAGATGGTGCGTGTGCTGAG
GCGGACGGCCTCCCGCTGCGCCCACGTGGCCAGGACCTACAGCATCGGGCGCAGCTTCGACGGCAGGGAG
CTGCTGGTCATCGAGTTCTCCAGCCGCCCCGGCCAGCACGAGCTGATGGAGCCCGAGGTGAAGCTCATCG
GCAACATTCATGGCAACGAGGTGGCGGGCCGGGAGATGCTCATCTACCTAGCCCAGTACCTGTGCTCTGA
GTACCTGCTTGGTAACCCCCGCATCCAGCGCCTGCTCAACACCACCCGCATCCACCTGCTGCCCTCCATG
AACCCTGACGGCTATGAGGTGGCAGCTGCCGAGGGTGCCGGCTACAACGGGTGGACGAGCGGGAGGCAGA
ACGCGCAGAACCTGGATCTGAACCGAAATTTCCCGGACCTGACGTCCGAGTACTACCGGCTGGCGGAGAC
CCGCGGCGCACGCAGCGACCACATCCCCATCCCCCAGCACTACTGGTGGGGTAAGGTGGCCCCGGAGACA
AAGGCAATCATGAAGTGGATGCAGACCATACCCTTTGTGCTCTCAGCCAGCCTTCATGGGGGCGACCTGG
TGGTGTCCTACCCCTTCGACTTCTCCAAGCACCCCCAGGAGGAGAAGATGTTTTCTCCCACGCCCGACGA
GAAGATGTTCAAGCTGCTGTCCAGAGCCTACGCTGACGTCCACCCCATGATGATGGACAGGTCGGAGAAT
AGGTGTGGAGGCAATTTCCTGAAGAGGGGGAGCATCATCAACGGGGCGGACTGGTACAGCTTCACGGGAG
GCATGTCCGATTTCAACTACCTGCACACCAACTGCTTTGAGATCACGGTAGAGCTGGGCTGTGTGAAGTT
CCCCCCCGAGGAGGCCCTGTACATACTCTGGCAGCACAACAAGGAGTCACTCCTGAATTTCGTGGAGACG
GTGCACCGGGGCATCAAAGGTGTGGTGACAGATAAATTCGGCAAGCCAGTCAAAAACGCCCGGATCTCAG
TCAAAGGCATTCGCCACGACATCACCACAGCCCCAGATGGTGACTACTGGAGACTGCTGCCCCCAGGTAT
CCACATTGTCATTGCCCAAGCCCCTGGCTACGCCAAAGTCATCAAGAAAGTCATCATCCCCGCCCGGATG
AAGAGGGCTGGCCGTGTGGACTTCATTCTGCAACCTCTGGGGATGGGACCCAAGAACTTTATTCATGGGC
TGCGGAGGACTGGGCCCCACGACCCACTGGGAGGTGCCAGCTCTTTGGGGGAGGCCACGGAGCCCGACCC
GCTCCGGGCGCGCAGGCAGCCCTCGGCCGACGGGAGTAAGCCCTGGTGGTGGTCCTACTTCACATCGCTG
AGCACCCACAGGCCACGCTGGCTGCTCAAGTACTAG

Translation (641 aa):
MPPPLPLLLLTVLVVAAARPGCEFERNPAATCVDLQLRTCSDAAYNHTTFPNLLQHRSWEVVEASSEYIL
LSVLHQLLEGQCNPDLRLLGCAVLAPRCEGGWVRRPCRHICEGLREVCQPAFDAIDMAWPYFLDCHRYFT
REDEGCYDPLEKLRGGLEADEALPSGLPPTFIRFSHHSYAQMVRVLRRTASRCAHVARTYSIGRSFDGRE
LLVIEFSSRPGQHELMEPEVKLIGNIHGNEVAGREMLIYLAQYLCSEYLLGNPRIQRLLNTTRIHLLPSM
NPDGYEVAAAEGAGYNGWTSGRQNAQNLDLNRNFPDLTSEYYRLAETRGARSDHIPIPQHYWWGKVAPET
KAIMKWMQTIPFVLSASLHGGDLVVSYPFDFSKHPQEEKMFSPTPDEKMFKLLSRAYADVHPMMMDRSEN
RCGGNFLKRGSIINGADWYSFTGGMSDFNYLHTNCFEITVELGCVKFPPEEALYILWQHNKESLLNFVET
VHRGIKGVVTDKFGKPVKNARISVKGIRHDITTAPDGDYWRLLPPGIHIVIAQAPGYAKVIKKVIIPARM
KRAGRVDFILQPLGMGPKNFIHGLRRTGPHDPLGGASSLGEATEPDPLRARRQPSADGSKPWWWSYFTSL
STHRPRWLLKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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