NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55692.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55692.1 Public Homo sapiens 1 PLD5 24 110 108 CCDS HistoryNCBI Gene:200150Re-query CCDS DB by CCDS ID:55692.1Re-query CCDS DB by GeneID:200150See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55692.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427495.5 ENSP00000401285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427495.5Link to Ensembl Protein Viewer:ENSP00000401285.1Re-query CCDS DB by Nucleotide ID:ENST00000427495Re-query CCDS DB by Protein ID:ENSP00000401285
Original member Current member NCBI NM_001195811.2 NP_001182740.1 Accepted alive Link to Nucleotide Sequence:NM_001195811.2Link to Protein Sequence:NP_001182740.1Re-query CCDS DB by Nucleotide ID:NM_001195811Re-query CCDS DB by Protein ID:NP_001182740Link to BLAST:NP_001182740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182740.1 474 Q8N7P1-4 474 100% 0 0

Chromosomal Locations for CCDS 55692.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 242089854 242090110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242100668 242100782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242107671 242107839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242113890 242114026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242124468 242124665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242219988 242220115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242265337 242265448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242288362 242288530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242348106 242348242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 242449354 242449356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1425 nt):
ATGTCCCAGCAGAAGTGCATCGTGATCTTTGCCCTGGTGTGCTGCTTTGCCATTCTGGTTGCACTGATCT
TTTCAGCCGTGGACATCATGGGAGAGGATGAGGATGGACTCTCAGAAAAAAATTGCCAAAATAAATGTCG
AATTGCCCTGGTGGAAAATATTCCTGAAGGCCTTAACTATTCAGAAAATGCACCATTTCACTTATCACTT
TTCCAAGGCTGGATGAATTTACTCAACATGGCCAAAAAGTCTGTTGACATAGTGTCTTCCCATTGGGATC
TCAACCACACTCATCCATCAGCATGTCAGGGTCAACGTCTTTTTGAAAAGTTGCTCCAGCTGACTTCGCA
AAATATTGAAATCAAGCTAGTGAGTGATGTAACAGCTGATTCAAAGGTATTAGAAGCCTTGAAATTAAAG
GGAGCCGAGGTGACGTACATGAACATGACCGCTTACAACAAGGGCCGGCTGCAGTCCTCCTTCTGGATCG
TGGACAAACAGCACGTGTATATCGGCAGTGCCGGTTTGGACTGGCAATCCCTGGGACAGATGAAAGAACT
CGGTGTCATCTTCTACAACTGCAGCTGCCTGGTCCTAGATTTACAAAGGATATTTGCTCTATATAGTTCA
TTAAAATTCAAAAGCAGAGTGCCTCAAACCTGGTCCAAAAGACTCTATGGAGTCTATGACAATGAAAAGA
AATTGCAACTTCAGTTGAATGAAACCAAATCTCAAGCATTTGTATCGAATTCTCCAAAACTCTTTTGCCC
TAAAAACAGAAGTTTTGACATAGATGCCATCTACAGTGTGATAGATGATGCCAAGCAGTATGTGTACATC
GCTGTCATGGACTACCTGCCTATCTCCAGCACAAGCACCAAAAGGACTTACTGGCCAGACTTGGATGCAA
AAATAAGAGAAGCATTAGTTTTACGAAGCGTTAGAGTTCGACTCCTTTTAAGCTTCTGGAAGGAAACTGA
TCCCCTTACGTTTAACTTTATTTCATCTCTTAAAGCGATTTGCACTGAAATAGCCAACTGCAGTTTGAAA
GTTAAATTTTTTGATCTGGAAAGAGAGAATGCTTGTGCTACAAAAGAACAAAAGAATCACACCTTTCCTA
GGTTAAATCGCAACAAGTACATGGTGACAGATGGAGCAGCTTATATTGGAAATTTTGATTGGGTAGGGAA
TGATTTCACTCAGAATGCTGGCACGGGCCTTGTTATCAACCAGGCAGATGTGAGGAACAACAGAAGCATC
ATTAAGCAACTTAAAGATGTGTTTGAAAGGGACTGGTATTCACCGTATGCCAAAACCTTACAGCCAACCA
AACAGCCGAACTGCTCAAGCCTGTTCAAACTCAAACCCCTCTCCAACAAAACTGCCACAGACGACACAGG
CGGAAAGGATCCCCGGAACGTATAA

Translation (474 aa):
MSQQKCIVIFALVCCFAILVALIFSAVDIMGEDEDGLSEKNCQNKCRIALVENIPEGLNYSENAPFHLSL
FQGWMNLLNMAKKSVDIVSSHWDLNHTHPSACQGQRLFEKLLQLTSQNIEIKLVSDVTADSKVLEALKLK
GAEVTYMNMTAYNKGRLQSSFWIVDKQHVYIGSAGLDWQSLGQMKELGVIFYNCSCLVLDLQRIFALYSS
LKFKSRVPQTWSKRLYGVYDNEKKLQLQLNETKSQAFVSNSPKLFCPKNRSFDIDAIYSVIDDAKQYVYI
AVMDYLPISSTSTKRTYWPDLDAKIREALVLRSVRVRLLLSFWKETDPLTFNFISSLKAICTEIANCSLK
VKFFDLERENACATKEQKNHTFPRLNRNKYMVTDGAAYIGNFDWVGNDFTQNAGTGLVINQADVRNNRSI
IKQLKDVFERDWYSPYAKTLQPTKQPNCSSLFKLKPLSNKTATDDTGGKDPRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH