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Report for CCDS53590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53590.1 Public Homo sapiens 11 SIRT3 24 110 108 CCDS HistoryNCBI Gene:23410Re-query CCDS DB by CCDS ID:53590.1Re-query CCDS DB by GeneID:23410See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53590.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529382.5 ENSP00000437216.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529382.5Link to Ensembl Protein Viewer:ENSP00000437216.1Re-query CCDS DB by Nucleotide ID:ENST00000529382Re-query CCDS DB by Protein ID:ENSP00000437216
Original member Current member NCBI NM_001017524.3 NP_001017524.1 Accepted alive Link to Nucleotide Sequence:NM_001017524.3Link to Protein Sequence:NP_001017524.1Re-query CCDS DB by Nucleotide ID:NM_001017524Re-query CCDS DB by Protein ID:NP_001017524Link to BLAST:NP_001017524.1
Original member Current member NCBI NM_001370318.1 NP_001357247.1 Accepted alive Link to Nucleotide Sequence:NM_001370318.1Link to Protein Sequence:NP_001357247.1Re-query CCDS DB by Nucleotide ID:NM_001370318Re-query CCDS DB by Protein ID:NP_001357247Link to BLAST:NP_001357247.1
Original member Current member NCBI NM_001370319.1 NP_001357248.1 Accepted alive Link to Nucleotide Sequence:NM_001370319.1Link to Protein Sequence:NP_001357248.1Re-query CCDS DB by Nucleotide ID:NM_001370319Re-query CCDS DB by Protein ID:NP_001357248Link to BLAST:NP_001357248.1
Original member Current member NCBI NM_001370320.1 NP_001357249.1 Accepted alive Link to Nucleotide Sequence:NM_001370320.1Link to Protein Sequence:NP_001357249.1Re-query CCDS DB by Nucleotide ID:NM_001370320Re-query CCDS DB by Protein ID:NP_001357249Link to BLAST:NP_001357249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017524.1 257 Q9NTG7-2 257 100% 0 0
NP_001357247.1 257 Q9NTG7-2 257 100% 0 0
NP_001357248.1 257 Q9NTG7-2 257 100% 0 0
NP_001357249.1 257 Q9NTG7-2 257 100% 0 0

Chromosomal Locations for CCDS 53590.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 216698 216718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 218832 219041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 224078 224239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 230452 230552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 232983 233215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 233343 233389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGGTGGGGGCCGGCATCAGCACACCCAGTGGCATTCCAGACTTCAGATCGCCGGGGAGTGGCCTGTACA
GCAACCTCCAGCAGTACGATCTCCCGTACCCCGAGGCCATTTTTGAACTCCCATTCTTCTTTCACAACCC
CAAGCCCTTTTTCACTTTGGCCAAGGAGCTGTACCCTGGAAACTACAAGCCCAACGTCACTCACTACTTT
CTCCGGCTGCTTCATGACAAGGGGCTGCTTCTGCGGCTCTACACGCAGAACATCGATGGGCTTGAGAGAG
TGTCGGGCATCCCTGCCTCAAAGCTGGTTGAAGCTCATGGAACCTTTGCCTCTGCCACCTGCACAGTCTG
CCAAAGACCCTTCCCAGGGGAGGACATTCGGGCTGACGTGATGGCAGACAGGGTTCCCCGCTGCCCGGTC
TGCACCGGCGTTGTGAAGCCCGACATTGTGTTCTTTGGGGAGCCGCTGCCCCAGAGGTTCTTGCTGCATG
TGGTTGATTTCCCCATGGCAGATCTGCTGCTCATCCTTGGGACCTCCCTGGAGGTGGAGCCTTTTGCCAG
CTTGACCGAGGCCGTGCGGAGCTCAGTTCCCCGACTGCTCATCAACCGGGACTTGGTGGGGCCCTTGGCT
TGGCATCCTCGCAGCAGGGACGTGGCCCAGCTGGGGGACGTGGTTCACGGCGTGGAAAGCCTAGTGGAGC
TTCTGGGCTGGACAGAAGAGATGCGGGACCTTGTGCAGCGGGAAACTGGGAAGCTTGATGGACCAGACAA
ATAG

Translation (257 aa):
MVGAGISTPSGIPDFRSPGSGLYSNLQQYDLPYPEAIFELPFFFHNPKPFFTLAKELYPGNYKPNVTHYF
LRLLHDKGLLLRLYTQNIDGLERVSGIPASKLVEAHGTFASATCTVCQRPFPGEDIRADVMADRVPRCPV
CTGVVKPDIVFFGEPLPQRFLLHVVDFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLVGPLA
WHPRSRDVAQLGDVVHGVESLVELLGWTEEMRDLVQRETGKLDGPDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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