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Report for CCDS82160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82160.1 Public Homo sapiens 17 TOM1L1 24 110 108 CCDS HistoryNCBI Gene:10040Re-query CCDS DB by CCDS ID:82160.1Re-query CCDS DB by GeneID:10040See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000570371.5 ENSP00000458553.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000570371.5Link to Ensembl Protein Viewer:ENSP00000458553.1Re-query CCDS DB by Nucleotide ID:ENST00000570371Re-query CCDS DB by Protein ID:ENSP00000458553
Original member Current member EBI ENST00000575333.5 ENSP00000458918.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000575333.5Link to Ensembl Protein Viewer:ENSP00000458918.1Re-query CCDS DB by Nucleotide ID:ENST00000575333Re-query CCDS DB by Protein ID:ENSP00000458918
Original member Current member NCBI NM_001321173.2 NP_001308102.1 Accepted alive Link to Nucleotide Sequence:NM_001321173.2Link to Protein Sequence:NP_001308102.1Re-query CCDS DB by Nucleotide ID:NM_001321173Re-query CCDS DB by Protein ID:NP_001308102Link to BLAST:NP_001308102.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308102.1 346 O75674-2 346 100% 0 0

Chromosomal Locations for CCDS 82160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 54900866 54900923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54903708 54903792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54905489 54905567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54912666 54912815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54913748 54913873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54914639 54914743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54915746 54915862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54930073 54930206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54936649 54936709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 54937109 54937234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGGCGTTTGGCAAGAGTCACCGGGATCCCTACGCGACCTCCGTGGGCCACCTCATAGAAAAGGCTACAT
TTGCTGGAGTTCAGACTGAAGATTGGGGCCAGTTCATGCACATCTGTGACATAATTAACACTACCCAGGA
TGGGCCAAAAGATGCAGTGAAAGCTTTGAAGAAAAGGATTTCCAAAAACTACAATCATAAAGAAATCCAA
CTTACCTTGTCACTTATTGACATGTGTGTGCAGAACTGTGGTCCAAGTTTCCAGTCTCTGATTGTGAAGA
AGGAATTTGTTAAAGAGAATTTAGTTAAGCTACTGAATCCCAGATACAACTTGCCATTAGACATTCAGAA
TAGAATCTTGAATTTCATTAAGACTTGGTCACAGGGCTTCCCAGGAGGTGTGGATGTAAGCGAAGTCAAA
GAAGTATACCTCGACCTGGTTAAGAAAGGCGTTCAGTTTCCTCCCTCAGAAGCAGAGGCTGAAACAGCAA
GACAAGAGACTGCTCAAATCTCATCAAATCCTCCAACATCTGTCCCTACTGCACCAGCTCTTTCTTCTGT
AATTGCTCCAAAGAACTCGACTGTTACATTGGTCCCAGAACAGATTGGAAAACTGCACAGTGAATTGGAT
ATGGTGAAAATGAATGTGCGAGTGATGTCCGCCATATTGATGGAGAATACTCCTGGGTCTGAAAACCATG
AAGACATAGAGCTTCTGCAGAAACTCTATAAAACAGGTCGGGAGATGCAGGAGAGGATCATGGACCTGCT
TGTGGTGGTGGAGAACGAAGATGTAACTGTTGAGCTAATTCAGGTGAATGAGGATTTGAATAATGCTATC
CTTGGATATGAGAGGTTTACTAGAAACCAACAAAGGATTTTGGAGCAAAATAAGAACCAGAAGGAAGCCA
CCAATACTACCAGTGAGCCTTCTGCCCCATCTCAAGATCTCCTCGACCTAAGTCCCAGTCCCCGGATGCC
TAGGGCCACTCTGGGAGAACTCAACACCATGAATAATCAACTTTCAGGCTTAAGTAAATAA

Translation (346 aa):
MAFGKSHRDPYATSVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQ
LTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGVDVSEVK
EVYLDLVKKGVQFPPSEAEAETARQETAQISSNPPTSVPTAPALSSVIAPKNSTVTLVPEQIGKLHSELD
MVKMNVRVMSAILMENTPGSENHEDIELLQKLYKTGREMQERIMDLLVVVENEDVTVELIQVNEDLNNAI
LGYERFTRNQQRILEQNKNQKEATNTTSEPSAPSQDLLDLSPSPRMPRATLGELNTMNNQLSGLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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