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Report for CCDS41489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41489.1 Public Homo sapiens 10 PHYH 24 110 108 CCDS HistoryNCBI Gene:5264Re-query CCDS DB by CCDS ID:41489.1Re-query CCDS DB by GeneID:5264See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41489.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396913.6 ENSP00000380121.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396913.6Link to Ensembl Protein Viewer:ENSP00000380121.2Re-query CCDS DB by Nucleotide ID:ENST00000396913Re-query CCDS DB by Protein ID:ENSP00000380121
Original member Current member NCBI NM_001037537.2 NP_001032626.1 Accepted alive Link to Nucleotide Sequence:NM_001037537.2Link to Protein Sequence:NP_001032626.1Re-query CCDS DB by Nucleotide ID:NM_001037537Re-query CCDS DB by Protein ID:NP_001032626Link to BLAST:NP_001032626.1
Original member Current member NCBI NM_001323080.2 NP_001310009.1 Accepted alive Link to Nucleotide Sequence:NM_001323080.2Link to Protein Sequence:NP_001310009.1Re-query CCDS DB by Nucleotide ID:NM_001323080Re-query CCDS DB by Protein ID:NP_001310009Link to BLAST:NP_001310009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032626.1 238 O14832-2 238 100% 0 0
NP_001310009.1 238 O14832-2 238 100% 0 0

Chromosomal Locations for CCDS 41489.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 13278301 13278354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13280976 13281110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13283690 13283839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13288360 13288541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13291831 13291912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 13294428 13294541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGAGAGATGTGACCATTTCGAAATCCGAATATGCTCCAAGTGAGAAGATGATCACGAAGGTCCAGGATT
TCCAGGAAGATAAGGAGCTCTTCAGATACTGCACTCTCCCCGAGATTCTGAAATATGTGGAGTGCTTCAC
TGGACCTAATATTATGGCCATGCACACAATGTTGATAAACAAACCTCCAGATTCTGGCAAGAAGACGTCC
CGTCACCCCCTGCACCAGGACCTGCACTATTTCCCCTTCAGGCCCAGCGATCTCATCGTTTGCGCCTGGA
CGGCGATGGAGCACATCAGCCGGAACAACGGCTGTCTGGTTGTGCTCCCAGGCACACACAAGGGCTCCCT
GAAGCCCCACGATTACCCCAAGTGGGAGGGGGGAGTTAACAAAATGTTCCACGGGATCCAGGACTACGAG
GAAAACAAGGCCCGGGTGCACCTGGTGATGGAGAAGGGCGACACTGTTTTCTTCCATCCTTTGCTCATCC
ACGGATCTGGTCAGAATAAAACCCAGGGATTCCGGAAGGCAATTTCCTGCCATTTCGCCAGTGCCGATTG
CCACTACATTGACGTGAAGGGCACCAGTCAAGAAAACATCGAGAAGGAAGTTGTAGGAATAGCACATAAA
TTCTTTGGAGCTGAAAATAGCGTGAACTTGAAGGATATTTGGATGTTTCGAGCTCGACTTGTGAAAGGAG
AAAGAACCAATCTTTGA

Translation (238 aa):
MRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTLPEILKYVECFTGPNIMAMHTMLINKPPDSGKKTS
RHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTHKGSLKPHDYPKWEGGVNKMFHGIQDYE
ENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQGFRKAISCHFASADCHYIDVKGTSQENIEKEVVGIAHK
FFGAENSVNLKDIWMFRARLVKGERTNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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