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Report for CCDS78027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78027.1 Public Homo sapiens 5 THBS4 24 110 108 CCDS HistoryNCBI Gene:7060Re-query CCDS DB by CCDS ID:78027.1Re-query CCDS DB by GeneID:7060See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511733.1 ENSP00000422298.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511733.1Link to Ensembl Protein Viewer:ENSP00000422298.1Re-query CCDS DB by Nucleotide ID:ENST00000511733Re-query CCDS DB by Protein ID:ENSP00000422298
Original member Current member NCBI NM_001306212.2 NP_001293141.1 Accepted alive Link to Nucleotide Sequence:NM_001306212.2Link to Protein Sequence:NP_001293141.1Re-query CCDS DB by Nucleotide ID:NM_001306212Re-query CCDS DB by Protein ID:NP_001293141Link to BLAST:NP_001293141.1
Original member Current member NCBI NM_001306213.2 NP_001293142.1 Accepted alive Link to Nucleotide Sequence:NM_001306213.2Link to Protein Sequence:NP_001293142.1Re-query CCDS DB by Nucleotide ID:NM_001306213Re-query CCDS DB by Protein ID:NP_001293142Link to BLAST:NP_001293142.1
Original member Current member NCBI NM_001306214.2 NP_001293143.1 Accepted alive Link to Nucleotide Sequence:NM_001306214.2Link to Protein Sequence:NP_001293143.1Re-query CCDS DB by Nucleotide ID:NM_001306214Re-query CCDS DB by Protein ID:NP_001293143Link to BLAST:NP_001293143.1

Chromosomal Locations for CCDS 78027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 80040262 80040280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80055785 80056032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80058206 80058314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80058708 80058790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80059440 80059491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80059703 80059905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80061695 80061832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80065409 80065477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80067973 80068125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80070306 80070410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80070643 80070750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80071021 80071180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80072278 80072396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80073275 80073327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80076855 80077048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80078049 80078227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80078921 80078969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80079062 80079258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80079905 80080077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80082406 80082545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 80083080 80083141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2613 nt):
ATGGGACGCTTAAACAAAGCCATCCTCCGTTACCTGAAGAACGATGGGAAGGTGCATTTGGTGGTTTTCA
ACAACCTGCAGCTGGCAGACGGAAGGCGGCACAGGATCCTCCTGAGGCTGAGCAATTTGCAGCGAGGGGC
CGGCTCCCTAGAGCTCTACCTGGACTGCATCCAGGTGGATTCCGTTCACAATCTCCCCAGGGCCTTTGCT
GGCCCCTCCCAGAAACCTGAGACCATTGAATTGAGGACTTTCCAGAGGAAGCCACAGGACTTCTTGGAAG
AGCTGAAGCTGGTGGTGAGAGGCTCACTGTTCCAGGTGGCCAGCCTGCAAGACTGCTTCCTGCAGCAGAG
TGAGCCACTGGCTGCCACAGGCACAGGGGACTTTAACCGGCAGTTCTTGGGTCAAATGACACAATTAAAC
CAACTCCTGGGAGAGGTGAAGGACCTTCTGAGACAGCAGGTTAAGGAAACATCATTTTTGCGAAACACCA
TAGCTGAATGCCAGGCTTGCGGTCCTCTCAAGTTTCAGTCTCCGACCCCAAGCACGGTGGTGCCCCCGGC
TCCCCCTGCACCGCCAACACGCCCACCTCGTCGGTGTGACTCCAACCCATGTTTCCGAGGTGTCCAATGT
ACCGACAGTAGAGATGGCTTCCAGTGTGGGCCCTGCCCCGAGGGCTACACAGGAAACGGGATCACCTGTA
TTGATGTTGATGAGTGCAAATACCATCCCTGCTACCCGGGCGTGCACTGCATAAATTTGTCTCCTGGCTT
CAGATGTGACGCCTGCCCAGTGGGCTTCACAGGGCCCATGGTGCAGGGTGTTGGGATCAGTTTTGCCAAG
TCAAACAAGCAGGTCTGCACTGACATTGATGAGTGTCGAAATGGAGCGTGCGTTCCCAACTCGATCTGCG
TTAATACTTTGGGATCTTACCGCTGTGGGCCTTGTAAGCCGGGGTATACTGGTGATCAGATAAGGGGATG
CAAAGCGGAAAGAAACTGCAGAAACCCAGAGCTGAACCCTTGCAGTGTGAATGCCCAGTGCATTGAAGAG
AGGCAGGGGGATGTGACATGTGTGTGTGGAGTCGGTTGGGCTGGAGATGGCTATATCTGTGGAAAGGATG
TGGACATCGACAGTTACCCCGACGAAGAACTGCCATGCTCTGCCAGGAACTGTAAAAAGGACAACTGCAA
ATATGTGCCAAATTCTGGCCAAGAAGATGCAGACAGAGATGGCATTGGCGACGCTTGTGACGAGGATGCT
GACGGAGATGGGATCCTGAATGAGCAGGATAACTGTGTCCTGATTCATAATGTGGACCAAAGGAACAGCG
ATAAAGATATCTTTGGGGATGCCTGTGATAACTGCCTGAGTGTCTTAAATAACGACCAGAAAGACACCGA
TGGGGATGGAAGAGGAGATGCCTGTGATGATGACATGGATGGAGATGGAATAAAAAACATTCTGGACAAC
TGCCCAAAATTTCCCAATCGTGACCAACGGGACAAGGATGGTGATGGTGTGGGGGATGCCTGTGACAGTT
GTCCTGATGTCAGCAACCCTAACCAGTCTGATGTGGATAATGATCTGGTTGGGGACTCCTGTGACACCAA
TCAGGACAGTGATGGAGATGGGCACCAGGACAGCACAGACAACTGCCCCACCGTCATTAACAGTGCCCAG
CTGGACACCGATAAGGATGGAATTGGTGACGAGTGTGATGATGATGATGACAATGATGGTATCCCAGACC
TGGTGCCCCCTGGACCAGACAACTGCCGGCTGGTCCCCAACCCAGCCCAGGAGGATAGCAACAGCGACGG
AGTGGGAGACATCTGTGAGTCTGACTTTGACCAGGACCAGGTCATCGATCGGATCGACGTCTGCCCAGAG
AACGCAGAGGTCACCCTGACCGACTTCAGGGCTTACCAGACCGTGGTCCTGGATCCTGAAGGGGATGCCC
AGATCGATCCCAACTGGGTGGTCCTGAACCAGGGCATGGAGATTGTACAGACCATGAACAGTGATCCTGG
CCTGGCAGTGGGGTACACAGCTTTTAATGGAGTTGACTTCGAAGGGACCTTCCATGTGAATACCCAGACA
GATGATGACTATGCAGGCTTTATCTTTGGCTACCAAGATAGCTCCAGCTTCTACGTGGTCATGTGGAAGC
AGACGGAGCAGACATATTGGCAAGCCACCCCATTCCGAGCAGTTGCAGAACCTGGCATTCAGCTCAAGGC
TGTGAAGTCTAAGACAGGTCCAGGGGAGCATCTCCGGAACTCCCTGTGGCACACGGGGGACACCAGTGAC
CAGGTCAGGCTGCTGTGGAAGGACTCCAGGAATGTGGGCTGGAAGGACAAGGTGTCCTACCGCTGGTTCC
TACAGCACAGGCCCCAGGTGGGCTACATCAGGGTACGATTTTATGAAGGCTCTGAGTTGGTGGCTGACTC
TGGCGTCACCATAGACACCACAATGCGTGGAGGCCGACTTGGCGTTTTCTGCTTCTCTCAAGAAAACATC
ATCTGGTCCAACCTCAAGTATCGCTGCAATGACACCATCCCTGAGGACTTCCAAGAGTTTCAAACCCAGA
ATTTCGACCGCTTCGATAATTAA

Translation (870 aa):
MGRLNKAILRYLKNDGKVHLVVFNNLQLADGRRHRILLRLSNLQRGAGSLELYLDCIQVDSVHNLPRAFA
GPSQKPETIELRTFQRKPQDFLEELKLVVRGSLFQVASLQDCFLQQSEPLAATGTGDFNRQFLGQMTQLN
QLLGEVKDLLRQQVKETSFLRNTIAECQACGPLKFQSPTPSTVVPPAPPAPPTRPPRRCDSNPCFRGVQC
TDSRDGFQCGPCPEGYTGNGITCIDVDECKYHPCYPGVHCINLSPGFRCDACPVGFTGPMVQGVGISFAK
SNKQVCTDIDECRNGACVPNSICVNTLGSYRCGPCKPGYTGDQIRGCKAERNCRNPELNPCSVNAQCIEE
RQGDVTCVCGVGWAGDGYICGKDVDIDSYPDEELPCSARNCKKDNCKYVPNSGQEDADRDGIGDACDEDA
DGDGILNEQDNCVLIHNVDQRNSDKDIFGDACDNCLSVLNNDQKDTDGDGRGDACDDDMDGDGIKNILDN
CPKFPNRDQRDKDGDGVGDACDSCPDVSNPNQSDVDNDLVGDSCDTNQDSDGDGHQDSTDNCPTVINSAQ
LDTDKDGIGDECDDDDDNDGIPDLVPPGPDNCRLVPNPAQEDSNSDGVGDICESDFDQDQVIDRIDVCPE
NAEVTLTDFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTQT
DDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEHLRNSLWHTGDTSD
QVRLLWKDSRNVGWKDKVSYRWFLQHRPQVGYIRVRFYEGSELVADSGVTIDTTMRGGRLGVFCFSQENI
IWSNLKYRCNDTIPEDFQEFQTQNFDRFDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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