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Report for CCDS6916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6916.1 Public Homo sapiens 9 SH3GLB2 24 110 108 CCDS HistoryNCBI Gene:56904Re-query CCDS DB by CCDS ID:6916.1Re-query CCDS DB by GeneID:56904See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6916.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372559.5 ENSP00000361640.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372559.5Link to Ensembl Protein Viewer:ENSP00000361640.1Re-query CCDS DB by Nucleotide ID:ENST00000372559Re-query CCDS DB by Protein ID:ENSP00000361640
Original member Current member EBI ENST00000372564.8 ENSP00000361645.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372564.8Link to Ensembl Protein Viewer:ENSP00000361645.3Re-query CCDS DB by Nucleotide ID:ENST00000372564Re-query CCDS DB by Protein ID:ENSP00000361645
Original member Current member NCBI NM_001287046.2 NP_001273975.1 Accepted alive Link to Nucleotide Sequence:NM_001287046.2Link to Protein Sequence:NP_001273975.1Re-query CCDS DB by Nucleotide ID:NM_001287046Re-query CCDS DB by Protein ID:NP_001273975Link to BLAST:NP_001273975.1
Original member Current member NCBI NM_020145.4 NP_064530.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020145.4Link to Protein Sequence:NP_064530.1Re-query CCDS DB by Nucleotide ID:NM_020145Re-query CCDS DB by Protein ID:NP_064530Link to BLAST:NP_064530.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273975.1 395 Q9NR46-1 395 100% 0 0
NP_064530.1 395 Q9NR46-1 395 100% 0 0

Chromosomal Locations for CCDS 6916.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 129008684 129008791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129009106 129009346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129009771 129009871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129010120 129010209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129010670 129010693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129012236 129012298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129014411 129014503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129014771 129014904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129021091 129021219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129022282 129022423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 129028092 129028154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGACTTCAACATGAAGAAGCTGGCGTCGGACGCGGGCATCTTCTTCACCCGGGCGGTGCAGTTCACGG
AGGAGAAATTTGGCCAGGCTGAGAAGACTGAGCTTGATGCCCACTTTGAAAACCTTCTGGCCCGGGCAGA
CAGCACCAAGAACTGGACAGAGAAGATCTTGAGGCAGACAGAGGTGCTGCTGCAGCCCAACCCCAGTGCC
CGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGGAAGGTCCCCTCAAGGGTCACCAACGGGGAGCTGC
TGGCTCAGTACATGGCAGACGCGGCCAGTGAGCTGGGGCCGACCACCCCCTATGGGAAGACACTGATCAA
GGTGGCAGAAGCTGAAAAGCAACTGGGAGCCGCGGAGAGGGATTTTATCCACACGGCCTCCATCAGCTTC
CTCACACCCTTGCGCAACTTCCTGGAGGGGGACTGGAAGACCATCTCGAAGGAGAGGCGGCTCCTCCAAA
ACCGGCGTCTGGACTTGGATGCCTGCAAAGCGAGGCTGAAGAAGGCCAAGGCTGCAGAAGCCAAAGCCAC
GACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTCTCGGCCAGCGCCTCCGCGCTCTGG
AATGATGAAGTGGACAAGGCCGAGCAGGAGCTCCGCGTGGCCCAGACAGAGTTTGACCGGCAAGCAGAAG
TGACCCGTCTCTTGCTGGAGGGAATCAGTAGCACTCACGTGAACCACCTGCGCTGCCTCCACGAGTTCGT
CAAGTCTCAGACAACCTACTACGCACAGTGCTACCGCCACATGCTGGACTTGCAGAAGCAGCTGGGCAGA
TTTCCCGGCACCTTCGTGGGCACCACAGAGCCCGCCTCCCCACCCCTGAGCAGCACCTCACCCACCACTG
CTGCGGCCACTATGCCTGTGGTGCCCTCTGTGGCCAGCCTGGCCCCTCCGGGGGAGGCCTCGCTCTGCCT
GGAAGAGGTGGCCCCCCCTGCCAGTGGGACCCGCAAAGCTCGGGTGCTCTATGACTACGAGGCAGCCGAC
AGCAGTGAGCTGGCCCTGCTGGCTGATGAGCTCATCACTGTCTACAGCCTGCCTGGCATGGACCCTGACT
GGCTCATTGGCGAGAGAGGCAACAAGAAGGGCAAGGTCCCTGTCACCTACTTGGAACTGCTCAGCTAG

Translation (395 aa):
MDFNMKKLASDAGIFFTRAVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSA
RVEEFLYEKLDRKVPSRVTNGELLAQYMADAASELGPTTPYGKTLIKVAEAEKQLGAAERDFIHTASISF
LTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASASALW
NDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQCYRHMLDLQKQLGR
FPGTFVGTTEPASPPLSSTSPTTAAATMPVVPSVASLAPPGEASLCLEEVAPPASGTRKARVLYDYEAAD
SSELALLADELITVYSLPGMDPDWLIGERGNKKGKVPVTYLELLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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