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Report for CCDS10906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10906.1 Public Homo sapiens 16 TXNL4B 24 110 108 CCDS HistoryNCBI Gene:54957Re-query CCDS DB by CCDS ID:10906.1Re-query CCDS DB by GeneID:54957See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10906.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268483.8 ENSP00000268483.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268483.8Link to Ensembl Protein Viewer:ENSP00000268483.3Re-query CCDS DB by Nucleotide ID:ENST00000268483Re-query CCDS DB by Protein ID:ENSP00000268483
Original member Current member EBI ENST00000426362.6 ENSP00000392310.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000426362.6Link to Ensembl Protein Viewer:ENSP00000392310.2Re-query CCDS DB by Nucleotide ID:ENST00000426362Re-query CCDS DB by Protein ID:ENSP00000392310
Original member Current member EBI ENST00000423037.5 ENSP00000408130.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423037.5Link to Ensembl Protein Viewer:ENSP00000408130.1Re-query CCDS DB by Nucleotide ID:ENST00000423037Re-query CCDS DB by Protein ID:ENSP00000408130
Original member Current member NCBI NM_001142317.2 NP_001135789.1 Accepted alive Link to Nucleotide Sequence:NM_001142317.2Link to Protein Sequence:NP_001135789.1Re-query CCDS DB by Nucleotide ID:NM_001142317Re-query CCDS DB by Protein ID:NP_001135789Link to BLAST:NP_001135789.1
Original member Current member NCBI NM_001142318.2 NP_001135790.1 Accepted alive Link to Nucleotide Sequence:NM_001142318.2Link to Protein Sequence:NP_001135790.1Re-query CCDS DB by Nucleotide ID:NM_001142318Re-query CCDS DB by Protein ID:NP_001135790Link to BLAST:NP_001135790.1
Original member Current member NCBI NM_017853.3 NP_060323.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017853.3Link to Protein Sequence:NP_060323.1Re-query CCDS DB by Nucleotide ID:NM_017853Re-query CCDS DB by Protein ID:NP_060323Link to BLAST:NP_060323.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135789.1 149 Q9NX01 149 100% 0 0
NP_001135790.1 149 Q9NX01 149 100% 0 0
NP_060323.1 149 Q9NX01 149 100% 0 0

Chromosomal Locations for CCDS 10906.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 72086637 72086802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72088987 72089138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 72090618 72090749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGAGCTTCCTACTGCCCAAGCTGACTAGCAAAAAGGAAGTAGACCAGGCGATAAAAAGTACTGCTGAGA
AGGTGTTGGTTCTCAGGTTTGGGAGAGATGAAGATCCTGTCTGTCTGCAGCTAGATGATATTCTTTCTAA
GACCTCTTCTGACTTAAGTAAAATGGCTGCTATATACCTGGTAGATGTGGACCAAACTGCAGTTTATACA
CAGTATTTTGACATCAGTTATATTCCATCTACTGTCTTTTTCTTCAATGGGCAGCATATGAAAGTGGATT
ATGGATCTCCAGATCACACTAAGTTTGTGGGAAGCTTCAAAACCAAACAAGACTTCATAGATTTGATTGA
AGTAATCTATCGAGGAGCAATGAGGGGGAAGCTTATTGTCCAAAGTCCTATTGATCCCAAGAATATTCCC
AAATATGACCTTCTCTATCAAGACATTTAG

Translation (149 aa):
MSFLLPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYT
QYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPIDPKNIP
KYDLLYQDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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