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Report for CCDS7205.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7205.2 Public Homo sapiens 10 ZNF485 24 110 108 CCDS HistoryNCBI Gene:220992Re-query CCDS DB by CCDS ID:7205.2Re-query CCDS DB by GeneID:220992See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 7205.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data. The N-terminal extension completes a KRAB domain that was truncated in the previous representation.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7205.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361807.8 ENSP00000354694.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361807.8Link to Ensembl Protein Viewer:ENSP00000354694.3Re-query CCDS DB by Nucleotide ID:ENST00000361807Re-query CCDS DB by Protein ID:ENSP00000354694
Original member Current member EBI ENST00000374435.3 ENSP00000363558.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374435.3Link to Ensembl Protein Viewer:ENSP00000363558.3Re-query CCDS DB by Nucleotide ID:ENST00000374435Re-query CCDS DB by Protein ID:ENSP00000363558
Original member Current member NCBI NM_001318140.2 NP_001305069.1 Accepted alive Link to Nucleotide Sequence:NM_001318140.2Link to Protein Sequence:NP_001305069.1Re-query CCDS DB by Nucleotide ID:NM_001318140Re-query CCDS DB by Protein ID:NP_001305069Link to BLAST:NP_001305069.1
Original member Current member NCBI NM_001318141.2 NP_001305070.1 Accepted alive Link to Nucleotide Sequence:NM_001318141.2Link to Protein Sequence:NP_001305070.1Re-query CCDS DB by Nucleotide ID:NM_001318141Re-query CCDS DB by Protein ID:NP_001305070Link to BLAST:NP_001305070.1
Original member Current member NCBI NM_145312.4 NP_660355.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145312.4Link to Protein Sequence:NP_660355.2Re-query CCDS DB by Nucleotide ID:NM_145312Re-query CCDS DB by Protein ID:NP_660355Link to BLAST:NP_660355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305069.1 441 Q8NCK3-1 441 100% 0 0
NP_001305070.1 441 Q8NCK3-1 441 100% 0 0
NP_660355.2 441 Q8NCK3-1 441 100% 0 0

Chromosomal Locations for CCDS 7205.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 43607051 43607074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43608614 43608740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43609255 43609350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 43616291 43617369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGCCCCAAGAGCCCAGATCCAGGGACCGCTGACATTTGGGGATGTGGCTGTGGCCTTTACCCGGATTG
AGTGGAGACACCTGGATGCTGCTCAGCGGGCCCTGTACAGGGATGTGATGCTGGAGAACTATGGGAATCT
GGTGTCTGTGGGGCTTCTCTCTTCCAAACCAAAACTAATTACTCAGTTGGAGCAAGGGGCAGAGCCCTGG
ACTGAGGTGCGAGAGGCTCCATCAGGCACACATGCAGTCGAGGATTACTGGTTTGAAACAAAGATGTCAG
CCCTAAAGCAAAGCACTTCTGAAGCATCTGTTCTGGGAGAGCGAACGAAAAGTGTCATGATGGAAAAAGG
CCTGGACTGGGAGGGCAGAAGCTCCACAGAGAAGAACTATAAGTGCAAGGAATGTGGGAAAGTCTTCAAA
TACAATTCGTCCTTTATTAGCCACCAGAGAAATCACACCAGTGAGAAACCACATAAATGTAAAGAATGTG
GGATCGCCTTTATGAACAGTTCATCCCTTTTAAATCACCATAAGGTTCATGCAGGCAAACAGCCTTATAG
ATGTATTGAATGTGGGAAGTTCCTGAAGAAGCACTCAACGTTTATCAACCATCAGAGAATTCATTCTAGG
GAGAAACCCCACAAATGCATTGAATGTGGAAAAACTTTCAGAAAGAACTCAATCCTTTTAAGTCATCAGA
GAATTCATACTGGCCAGAAACCCTACAAATGTAATGACTGTGGGAAAGCCTTCGCTCAGAATGCAGCTCT
TACTCGTCATGAAAGAATACATAGTGGAGAGAAGCCTTTTAAATGTAACAAGTGTGGGAGAGCTTTCAGG
GATAATTCAACTGTGTTGGAACATCAGAAAATCCATACTGGTGAGAAGCCATATCAGTGTAATGAATGTG
GAAAAGCCTTTAGGAAGAGCTCAACTCTTATTAGTCACCAAAGAATGCATACTGGGGAGAAACCCTATCA
CTGCAGTAAATGTGGAAAATCTTTCAGGTATAGCTCATCCTTTGCTGGTCATCAGAAAACTCACAGTGGA
AATAAACCGTATCAGTGTCGTGACTGTGGGAAGGCCTTTACAAAGAGCTCAACCCTTACTGGACATCAGA
GAATTCATACTGGAGAAAAACCCTATCACTGTAAGAAATGTGGGAAAGCCTTTCGGCACAGCTCAGGCCT
TGTTGAACATCAGAGACTCCATACTGGGGAAAAACCTTATAAATGTAATGAATGTGGGAAAGCTTTTCCC
CGAAGTTCAGCCCTTAAGCAACATAAGAAAATTCATAATAAAGAAAGAGCCATGAAATGTAGTTAG

Translation (441 aa):
MAPRAQIQGPLTFGDVAVAFTRIEWRHLDAAQRALYRDVMLENYGNLVSVGLLSSKPKLITQLEQGAEPW
TEVREAPSGTHAVEDYWFETKMSALKQSTSEASVLGERTKSVMMEKGLDWEGRSSTEKNYKCKECGKVFK
YNSSFISHQRNHTSEKPHKCKECGIAFMNSSSLLNHHKVHAGKQPYRCIECGKFLKKHSTFINHQRIHSR
EKPHKCIECGKTFRKNSILLSHQRIHTGQKPYKCNDCGKAFAQNAALTRHERIHSGEKPFKCNKCGRAFR
DNSTVLEHQKIHTGEKPYQCNECGKAFRKSSTLISHQRMHTGEKPYHCSKCGKSFRYSSSFAGHQKTHSG
NKPYQCRDCGKAFTKSSTLTGHQRIHTGEKPYHCKKCGKAFRHSSGLVEHQRLHTGEKPYKCNECGKAFP
RSSALKQHKKIHNKERAMKCS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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