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Report for CCDS54342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54342.1 Public Homo sapiens 2 SLC30A6 24 110 108 CCDS HistoryNCBI Gene:55676Re-query CCDS DB by CCDS ID:54342.1Re-query CCDS DB by GeneID:55676See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435660.5 ENSP00000399005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435660.5Link to Ensembl Protein Viewer:ENSP00000399005.1Re-query CCDS DB by Nucleotide ID:ENST00000435660Re-query CCDS DB by Protein ID:ENSP00000399005
Original member Current member NCBI NM_001193514.3 NP_001180443.1 Accepted alive Link to Nucleotide Sequence:NM_001193514.3Link to Protein Sequence:NP_001180443.1Re-query CCDS DB by Nucleotide ID:NM_001193514Re-query CCDS DB by Protein ID:NP_001180443Link to BLAST:NP_001180443.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180443.1 438 Q6NXT4-3 438 100% 0 0

Chromosomal Locations for CCDS 54342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32165901 32165903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32171287 32171373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32174063 32174147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32175319 32175361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32184273 32184338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192336 32192416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32192918 32192953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32193889 32193983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197344 32197392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32197707 32197826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32204590 32204692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32206886 32206933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32220213 32220713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGGGACAATTCATCTCTTTCGAAAACCACAAAGATCCTTTTTTGGCAAGTTGTTACGGGAATTTAGAC
TTGTAGCAGCTGACCGAAGGTCCTGGAAGATACTGCTCTTTGGTGTAATAAACTTGATATGTACTGGCTT
CCTGCTTATGTGGTGCAGTTCTACTAATAGTATAGCTTTAACTGCCTATACTTACCTGACCATTTTTGAT
CTTTTTAGTTTAATGACATGTTTAATAAGTTACTGGGTAACATTGAGGAAACCTAGCCCTGTCTATTCAT
TTGGGTTTGAAAGATTAGAAGTCCTGGCTGTATTTGCCTCCACAGTCTTGGCACAGTTGGGAGCTCTCTT
TATATTAAAAGAAAGTGCAGAACGCTTTTTGGAACAGCCCGAGATACACACGGGAAGATTATTAGTTGGT
ACTTTTGTGGCTCTTTGTTTCAACCTGTTCACGATGCTTTCTATTCGGAATAAACCTTTTGCTTATGTCT
CAGAAGCTGCTAGTACGAGCTGGCTTCAAGAGCATGTTGCAGATCTTAGTCGAAGCTTGTGTGGAATTAT
TCCGGGACTTAGCAGTATCTTCCTTCCCCGAATGAATCCATTTGTTTTGATTGATCTTGCTGGAGCATTT
GCTCTTTGTATTACATATATGCTCATTGAAATTAATAATTATTTTGCCGTAGACACTGCCTCTGCTATAG
CTATTGCCTTGATGACATTTGGCACTATGTATCCCATGAGTGTGTACAGTGGGAAAGTCTTACTCCAGAC
AACACCACCCCATGTTATTGGTCAGTTGGACAAACTCATCAGAGAGGCTGGATCAGTGCATGTAAGAATT
CGACGAGATGCCAATGAACAAATGGTTCTTGCTCATGTGACCAACAGGCTGTACACTCTAGTGTCTACTC
TAACTGTTCAAATTTTCAAGGATGACTGGATTAGGCCTGCCTTATTGTCTGGGCCTGTTGCAGCCAATGT
CCTAAACTTTTCAGATCATCACGTAATCCCAATGCCTCTTTTAAAGGGTACTGATGATTTGAACCCAGTT
ACATCAACTCCAGCTAAACCTAGTAGTCCACCTCCAGAATTTTCATTTAACACTCCTGGGAAAAATGTGA
ACCCAGTTATTCTTCTAAACACACAAACAAGGCCTTATGGTTTTGGTCTCAATCATGGACACACACCTTA
CAGCAGCATGCTTAATCAAGGACTTGGAGTTCCAGGAATTGGAGCAACTCAAGGATTGAGGACTGGTTTT
ACAAATATACCAAGTAGATATGGAACTAATAATAGAATTGGACAACCAAGACCATGA

Translation (438 aa):
MGTIHLFRKPQRSFFGKLLREFRLVAADRRSWKILLFGVINLICTGFLLMWCSSTNSIALTAYTYLTIFD
LFSLMTCLISYWVTLRKPSPVYSFGFERLEVLAVFASTVLAQLGALFILKESAERFLEQPEIHTGRLLVG
TFVALCFNLFTMLSIRNKPFAYVSEAASTSWLQEHVADLSRSLCGIIPGLSSIFLPRMNPFVLIDLAGAF
ALCITYMLIEINNYFAVDTASAIAIALMTFGTMYPMSVYSGKVLLQTTPPHVIGQLDKLIREAGSVHVRI
RRDANEQMVLAHVTNRLYTLVSTLTVQIFKDDWIRPALLSGPVAANVLNFSDHHVIPMPLLKGTDDLNPV
TSTPAKPSSPPPEFSFNTPGKNVNPVILLNTQTRPYGFGLNHGHTPYSSMLNQGLGVPGIGATQGLRTGF
TNIPSRYGTNNRIGQPRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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