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Report for CCDS5035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5035.1 Public Homo sapiens 6 FHL5 24 110 108 CCDS HistoryNCBI Gene:9457Re-query CCDS DB by CCDS ID:5035.1Re-query CCDS DB by GeneID:9457See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326771.2 ENSP00000326022.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000326771.2Link to Ensembl Protein Viewer:ENSP00000326022.2Re-query CCDS DB by Nucleotide ID:ENST00000326771Re-query CCDS DB by Protein ID:ENSP00000326022
Original member Current member EBI ENST00000450218.6 ENSP00000396390.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000450218.6Link to Ensembl Protein Viewer:ENSP00000396390.2Re-query CCDS DB by Nucleotide ID:ENST00000450218Re-query CCDS DB by Protein ID:ENSP00000396390
Original member Current member EBI ENST00000541107.5 ENSP00000442357.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541107.5Link to Ensembl Protein Viewer:ENSP00000442357.1Re-query CCDS DB by Nucleotide ID:ENST00000541107Re-query CCDS DB by Protein ID:ENSP00000442357
Original member Current member NCBI NM_001170807.3 NP_001164278.1 Accepted alive Link to Nucleotide Sequence:NM_001170807.3Link to Protein Sequence:NP_001164278.1Re-query CCDS DB by Nucleotide ID:NM_001170807Re-query CCDS DB by Protein ID:NP_001164278Link to BLAST:NP_001164278.1
Original member Current member NCBI NM_001322466.2 NP_001309395.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322466.2Link to Protein Sequence:NP_001309395.1Re-query CCDS DB by Nucleotide ID:NM_001322466Re-query CCDS DB by Protein ID:NP_001309395Link to BLAST:NP_001309395.1
Original member Current member NCBI NM_001322467.1 NP_001309396.1 Accepted alive Link to Nucleotide Sequence:NM_001322467.1Link to Protein Sequence:NP_001309396.1Re-query CCDS DB by Nucleotide ID:NM_001322467Re-query CCDS DB by Protein ID:NP_001309396Link to BLAST:NP_001309396.1
Original member Current member NCBI NM_020482.6 NP_065228.4 Accepted alive Link to Nucleotide Sequence:NM_020482.6Link to Protein Sequence:NP_065228.4Re-query CCDS DB by Nucleotide ID:NM_020482Re-query CCDS DB by Protein ID:NP_065228Link to BLAST:NP_065228.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164278.1 284 Q5TD97 284 100% 0 0
NP_001309395.1 284 Q5TD97 284 100% 0 0
NP_001309396.1 284 Q5TD97 284 100% 0 0
NP_065228.4 284 Q5TD97 284 100% 0 0

Chromosomal Locations for CCDS 5035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 96603614 96603772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96604750 96604924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96605902 96606071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96610572 96610758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 96615609 96615772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGACAACTGCTCACTTTTACTGTCAATACTGCACAGCATCACTTCTTGGGAAGAAATATGTACTAAAGG
ATGACAGTCCATACTGTGTTACATGTTATGATCGTGTATTTTCTAACTATTGCGAGGAATGCAAAAAACC
AATTGAATCTGATTCTAAGGATCTTTGTTACAAAGACCGGCACTGGCATGAAGGATGCTTCAAGTGCACC
AAATGCAATCACTCTTTGGTGGAAAAGCCTTTTGCTGCCAAGGATGAGCGCCTGCTGTGCACGGAGTGCT
ATTCTAACGAGTGCTCCTCCAAGTGCTTCCACTGCAAGAGGACCATCATGCCTGGTTCCCGCAAAATGGA
ATTTAAGGGAAACTACTGGCATGAAACCTGTTTTGTGTGTGAGAATTGCCGACAACCTATAGGGACAAAG
CCTTTGATCTCCAAAGAGAGTGGCAATTATTGTGTGCCATGTTTTGAGAAGGAGTTTGCTCACTACTGCA
ACTTTTGTAAGAAGGTGATAACTTCAGGTGGGATAACATTTTGTGACCAGCTATGGCATAAAGAGTGTTT
TCTGTGTAGTGGCTGTAGGAAAGATCTCTGTGAAGAACAGTTCATGTCCAGAGACGACTATCCATTCTGC
GTGGACTGCTACAACCATCTTTATGCCAACAAGTGTGTAGCCTGTTCCAAACCCATTAGTGGTCTCACAG
GTGCCAAGTTTATCTGCTTTCAAGACAGCCAGTGGCATAGCGAATGCTTTAACTGCGGGAAATGCTCTGT
CTCCTTGGTGGGTAAAGGCTTCCTGACCCAGAACAAGGAAATCTTCTGCCAAAAATGTGGCTCCGGAATG
GACACTGACATCTAG

Translation (284 aa):
MTTAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEGCFKCT
KCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCENCRQPIGTK
PLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQLWHKECFLCSGCRKDLCEEQFMSRDDYPFC
VDCYNHLYANKCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM
DTDI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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