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Report for CCDS3991.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3991.1 Public Homo sapiens 5 SREK1 24 110 108 CCDS HistoryNCBI Gene:140890Re-query CCDS DB by CCDS ID:3991.1Re-query CCDS DB by GeneID:140890See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3991.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380918.7 ENSP00000370305.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380918.7Link to Ensembl Protein Viewer:ENSP00000370305.3Re-query CCDS DB by Nucleotide ID:ENST00000380918Re-query CCDS DB by Protein ID:ENSP00000370305
Original member Current member NCBI NM_001323527.2 NP_001310456.1 Accepted alive Link to Nucleotide Sequence:NM_001323527.2Link to Protein Sequence:NP_001310456.1Re-query CCDS DB by Nucleotide ID:NM_001323527Re-query CCDS DB by Protein ID:NP_001310456Link to BLAST:NP_001310456.1
Original member Current member NCBI NM_139168.4 NP_631907.1 Accepted alive Link to Nucleotide Sequence:NM_139168.4Link to Protein Sequence:NP_631907.1Re-query CCDS DB by Nucleotide ID:NM_139168Re-query CCDS DB by Protein ID:NP_631907Link to BLAST:NP_631907.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310456.1 508 Q8WXA9-1 508 100% 0 0
NP_631907.1 508 Q8WXA9-1 508 100% 0 0

Chromosomal Locations for CCDS 3991.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 66159272 66159334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66162109 66162273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66162414 66162592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66163792 66163922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66164783 66164897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66170051 66170170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66170585 66170947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66174946 66175041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66177514 66177658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66178719 66178868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGACAAGTCTGATGCCTGGTGCAGGATTGCTTCCAATACCGACCCCAAATCCTTTGACTACTCTTGGTG
TTTCACTTAGCAGTTTGGGAGCTATACCAGCAGCAGCACTAGACCCCAACATTGCAACACTTGGAGAGAT
ACCACAGCCACCACTTATGGGAAACGTGGATCCTTCCAAAATAGATGAAATTAGGAGAACGGTTTATGTT
GGAAATCTGAATTCCCAGACAACGACAGCTGATCAACTACTTGAATTTTTTAAACAAGTTGGAGAAGTGA
AGTTTGTGCGGATGGCAGGTGATGAGACTCAGCCAACTCGGTTTGCTTTTGTGGAATTTGCAGACCAAAA
TTCTGTACCAAGGGCCCTTGCTTTTAATGGAGTTATGTTTGGAGACAGGCCACTGAAAATAAATCACTCC
AACAATGCAATAGTAAAACCCCCTGAGATGACACCTCAGGCTGCAGCTAAGGAGTTAGAAGAAGTAATGA
AGCGAGTACGAGAAGCTCAGTCATTTATCTCAGCAGCTATTGAACCAGAGTCTGGAAAGAGCAATGAAAG
AAAAGGCGGTCGATCTCGTTCCCATACTCGCTCAAAATCCAGGTCTAGCTCAAAATCCCATTCTAGAAGG
AAAAGATCACAATCAAAACACAGGAGTAGATCCCATAATAGATCACGTTCAAGACAGAAAGACAGACGTA
GATCTAAGAGCCCACATAAAAAACGCTCTAAATCAAGGGAGAGACGGAAGTCAAGGAGTCGTTCGCATTC
ACGGGACAAGAGAAAAGACACTCGAGAAAAGATCAAGGAAAAGGAAAGAGTGAAAGAGAAAGACAGGGAA
AAGGAGAGAGAGAGGGAAAAGGAACGTGAAAAAGAAAAGGAACGGGGTAAAAACAAAGACCGGGACAAGG
AACGGGAAAAGGACCGGGAAAAAGACAAGGAAAAGGACAGAGAGAGAGAACGGGAAAAAGAGCATGAGAA
GGATCGAGACAAAGAGAAGGAAAAGGAACAGGACAAAGAAAAGGAACGAGAAAAAGACAGATCCAAAGAG
ATAGATGAAAAAAGAAAGAAGGATAAAAAATCCAGAACACCACCCAGGAGTTACAATGCATCGCGAAGAT
CTCGTAGTTCCAGCAGGGAAAGGCGTAGGAGGAGGAGCAGGAGTTCTTCCAGATCGCCAAGAACATCAAA
AACCATAAAAAGGAAATCTTCTAGATCTCCGTCCCCCAGGAGCAGAAATAAGAAGGATAAAAAGAGAGAA
AAAGAAAGGGACCACATCAGTGAAAGAAGAGAGAGAGAACGTTCAACGTCTATGAGAAAGAGTTCTAATG
ATAGAGATGGGAAGGAGAAGTTGGAGAAGAACAGTACTTCACTTAAAGAGAAAGAGCACAATAAAGAACC
AGATTCAAGTGTGAGCAAAGAAGTAGATGACAAGGATGCACCAAGGACTGAGGAAAACAAAATACAGCAC
AATGGGAATTGTCAGCTGAATGAAGAAAACCTCTCTACCAAAACAGAAGCAGTATAG

Translation (508 aa):
MTSLMPGAGLLPIPTPNPLTTLGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYV
GNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS
NNAIVKPPEMTPQAAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRR
KRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDRE
KEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE
IDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKRE
KERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQH
NGNCQLNEENLSTKTEAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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