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Report for CCDS82732.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82732.1 Public Homo sapiens 3 PRRT3 24 110 108 CCDS HistoryNCBI Gene:285368Re-query CCDS DB by CCDS ID:82732.1Re-query CCDS DB by GeneID:285368See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82732.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000411976.2 ENSP00000404512.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411976.2Link to Ensembl Protein Viewer:ENSP00000404512.2Re-query CCDS DB by Nucleotide ID:ENST00000411976Re-query CCDS DB by Protein ID:ENSP00000404512
Original member Current member NCBI NM_001318871.2 NP_001305800.1 Accepted alive Link to Nucleotide Sequence:NM_001318871.2Link to Protein Sequence:NP_001305800.1Re-query CCDS DB by Nucleotide ID:NM_001318871Re-query CCDS DB by Protein ID:NP_001305800Link to BLAST:NP_001305800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305800.1 421 Q5FWE3-3 421 100% 0 0

Chromosomal Locations for CCDS 82732.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 9948663 9948913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 9949101 9950115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCCTCCAGCCCATGGGGCTGTGTATGTGGCCTTCTGCTGTTGCTGCTGCCACTCCTGGGGACTGGCC
CTGCCCTGGGGAGGGGCTTTCCCAGGCCACTTGAAAACTCCGAAATCCCTATGATCCCTGGAGCCCACCC
CAAGGGCTCTGTGGGCTCAGAGCCCCAGGCCTTTGACGTGTTCCCGGAGAACCCCAGAGCTGACAGTCAC
AGGAACTCTGATGTCCGCCACGCCCCTGCTGAAGAGATGCCTGAGAAGCCTGTAGCCTCTCCCCTTGGCC
CAGCCCTGTACGGGCCCAAAGCAGCACAAGGAGCTCAGAGAGAACGACTCCCAGTAACTGATGACCTCCA
GATGGCTCAAGGACCAAGCTCCCACGGCTGGACAGGACCTCTGGACTCACAAGAGCTTCTGCAGCAAGAA
GCAGTGGCTCCCCACCCAGTGGGCCACCCTCATCTCACTTTCATCCCCACAACTCCCAGACGTCAACTCA
GGGTAGCCACAGTTCCTCCCTCCCTGCAGCATGAAGGCCAAGAGGGACAGTGGCCACCTAGAGATGAGGG
TCTGAAGGCCAAAACTAAGAGCAGGGTCCCACCCACTTCTCCCTCAGACCACCAGGGCCCACCCCACACC
CTTGTTTCCCACTCAGGTACTGTCAAGAGGCCAGTGCTGGAAGGACAGGGTGGGTTTGAGGAACACTTGC
AGGAGGCAGCTCAAGGTCCCCACTTCACCCAGCAGGATCCAGCAGCCCCTGATGTTGGCTCAGTACCCCC
AGTTGAGGTGGTGTACTCTCAGGAGCCAGGGGCCCAGCCAGACTTGGCATTGGCCAGAAGCCTTCCTCCT
GCTGAGGAGCTGCCGGTTGAGACCCCCAAGAGGGCTGGCGCTGAGGTGTCCTGGGAAGTCAGCTCCCCAG
GTCCCCCGCCCAAGCAGGCTGACCTTCCTGACGCTAAGGATTCACCAGGACCCCAGCCCACGGATCCACC
CGCCTCAGAGGCTCCTGATCGGCCGTCTAAGCCAGAGAGAGCAGCAATGAATGGAGCAGACCCCATCTCC
CCCCAGCGGGTGAGAGGAGCTGTGGAGGCCCCAGGCACCCCCAAGTCTCTCATCCCTGGTCCCTCAGACC
CTGGCCCAGCTGTAAACCGAACAGAGAGCCCCATGGGGGCCCTGCAGCCAGGTGAGAGCATGGCTGGGGT
GTGGGGAGAGGGAGTGCTCTGTCTAGTAACTGAGAACCTCTGTTGGGGATGTATGGGGGCGGAGGGTGGG
GAATGA

Translation (421 aa):
MASSPWGCVCGLLLLLLPLLGTGPALGRGFPRPLENSEIPMIPGAHPKGSVGSEPQAFDVFPENPRADSH
RNSDVRHAPAEEMPEKPVASPLGPALYGPKAAQGAQRERLPVTDDLQMAQGPSSHGWTGPLDSQELLQQE
AVAPHPVGHPHLTFIPTTPRRQLRVATVPPSLQHEGQEGQWPPRDEGLKAKTKSRVPPTSPSDHQGPPHT
LVSHSGTVKRPVLEGQGGFEEHLQEAAQGPHFTQQDPAAPDVGSVPPVEVVYSQEPGAQPDLALARSLPP
AEELPVETPKRAGAEVSWEVSSPGPPPKQADLPDAKDSPGPQPTDPPASEAPDRPSKPERAAMNGADPIS
PQRVRGAVEAPGTPKSLIPGPSDPGPAVNRTESPMGALQPGESMAGVWGEGVLCLVTENLCWGCMGAEGG
E


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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