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Report for CCDS14604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14604.1 Public Homo sapiens X GRIA3 24 110 108 CCDS HistoryNCBI Gene:2892Re-query CCDS DB by CCDS ID:14604.1Re-query CCDS DB by GeneID:2892See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622768.5 ENSP00000481554.1 MANE Plus Clinical Accepted alive Link to Ensembl Transcript Viewer:ENST00000622768.5Link to Ensembl Protein Viewer:ENSP00000481554.1Re-query CCDS DB by Nucleotide ID:ENST00000622768Re-query CCDS DB by Protein ID:ENSP00000481554
Original member Current member NCBI NM_000828.5 NP_000819.4 MANE Plus Clinical Accepted alive Link to Nucleotide Sequence:NM_000828.5Link to Protein Sequence:NP_000819.4Re-query CCDS DB by Nucleotide ID:NM_000828Re-query CCDS DB by Protein ID:NP_000819Link to BLAST:NP_000819.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000819.4 894 P42263-1 894 100% 0 0

Chromosomal Locations for CCDS 14604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 123184536 123184644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123185832 123185990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123253303 123253542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123326026 123326213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123354910 123354963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123394968 123395129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123398636 123398803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123402994 123403098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123403412 123403519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123404708 123404914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123417402 123417778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123427941 123428139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123464865 123465112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123465674 123465788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 123482799 123483044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGGCCAGGCAGAAGAAAATGGGGCAAAGCGTGCTCCGGGCGGTCTTCTTTTTAGTCCTGGGGCTTTTGG
GTCATTCTCACGGAGGATTCCCCAACACCATCAGCATAGGTGGACTTTTCATGAGAAACACAGTGCAGGA
GCACAGCGCTTTCCGCTTTGCCGTGCAGTTATACAACACCAACCAGAACACCACCGAGAAGCCCTTCCAT
TTGAATTACCACGTAGATCACTTGGATTCCTCCAATAGTTTTTCCGTGACAAATGCTTTCTGCTCCCAGT
TCTCGAGAGGGGTGTATGCCATCTTTGGATTCTATGACCAGATGTCAATGAACACCCTGACCTCCTTCTG
TGGGGCCCTGCACACATCCTTTGTTACGCCTAGCTTCCCCACTGACGCAGATGTGCAGTTTGTCATCCAG
ATGCGCCCAGCCTTGAAGGGCGCTATTCTGAGTCTTCTGGGTCATTACAAGTGGGAGAAGTTTGTGTACC
TCTATGACACAGAACGAGGATTTTCCATCCTCCAAGCGATTATGGAAGCAGCAGTGCAAAACAACTGGCA
AGTAACAGCAAGGTCTGTGGGAAACATAAAGGACGTCCAAGAATTCAGGCGCATCATTGAAGAAATGGAC
AGGAGGCAGGAAAAGCGATACTTGATTGACTGCGAAGTCGAAAGGATTAACACAATTTTGGAACAGGTTG
TGATCCTAGGGAAACACTCAAGAGGTTATCACTACATGCTCGCTAACCTGGGTTTTACTGATATTTTACT
GGAAAGAGTCATGCATGGGGGAGCCAACATTACAGGTTTCCAGATTGTCAACAATGAAAACCCTATGGTT
CAGCAGTTCATACAGCGCTGGGTGAGGCTGGATGAAAGGGAATTCCCTGAAGCCAAGAATGCACCACTAA
AGTATACATCTGCATTGACACACGACGCAATACTGGTCATAGCAGAAGCTTTCCGCTACCTGAGGAGGCA
GCGAGTAGATGTGTCCCGGAGAGGAAGTGCTGGAGACTGCTTAGCAAATCCTGCTGTGCCCTGGAGTCAA
GGAATTGATATTGAGAGAGCTCTGAAAATGGTGCAAGTACAAGGAATGACTGGAAATATTCAATTTGACA
CTTATGGACGTAGGACAAATTATACCATCGATGTGTATGAAATGAAAGTCAGTGGCTCTCGAAAAGCTGG
CTACTGGAATGAGTATGAAAGGTTTGTGCCTTTCTCAGATCAGCAAATCAGCAATGACAGTGCATCCTCA
GAGAATCGGACCATAGTAGTGACTACCATTCTGGAATCACCATATGTAATGTACAAGAAGAACCATGAGC
AACTGGAAGGAAATGAACGATATGAAGGCTATTGTGTAGACCTAGCCTATGAAATAGCCAAACATGTAAG
GATCAAATACAAATTGTCCATCGTTGGTGACGGGAAATATGGTGCAAGGGATCCAGAGACTAAAATATGG
AACGGCATGGTTGGGGAACTTGTCTATGGGAGAGCTGATATAGCTGTTGCTCCACTCACTATAACATTGG
TCCGTGAAGAAGTCATAGATTTTTCAAAGCCATTCATGAGCCTGGGCATCTCCATCATGATAAAGAAGCC
TCAGAAATCAAAACCAGGCGTATTCTCATTTCTGGATCCCCTGGCTTATGAAATCTGGATGTGCATTGTC
TTTGCTTACATTGGAGTCAGCGTAGTTCTTTTCCTAGTCAGCAGGTTCAGTCCTTATGAATGGCACTTGG
AAGACAACAATGAAGAACCTCGTGACCCACAAAGTCCTCCTGATCCTCCAAATGAATTTGGAATATTTAA
CAGTCTTTGGTTTTCCTTGGGTGCCTTTATGCAGCAAGGATGTGATATTTCTCCAAGATCACTCTCCGGG
CGCATTGTTGGAGGGGTTTGGTGGTTCTTCACCCTGATCATAATTTCTTCCTATACTGCCAATCTCGCTG
CTTTCCTGACTGTGGAGAGGATGGTTTCTCCCATAGAGAGTGCTGAAGACTTAGCTAAACAGACTGAAAT
TGCATATGGGACCCTGGACTCCGGTTCAACAAAAGAATTTTTCAGAAGATCCAAAATTGCTGTGTACGAG
AAAATGTGGTCTTACATGAAATCAGCGGAGCCATCTGTGTTTACCAAAACAACAGCAGACGGAGTGGCCC
GAGTGCGAAAGTCCAAGGGAAAGTTCGCCTTCCTGCTGGAGTCAACCATGAATGAGTACATTGAGCAGAG
AAAACCATGTGATACGATGAAAGTTGGTGGAAATCTGGATTCCAAAGGCTATGGTGTGGCAACCCCTAAA
GGCTCAGCATTAAGAAATGCTGTTAACCTGGCAGTATTAAAACTGAATGAGCAAGGCCTCTTGGACAAAT
TGAAAAACAAATGGTGGTACGACAAAGGAGAGTGCGGCAGCGGGGGCGGTGACTCCAAGGACAAGACCAG
CGCTCTGAGCCTGAGCAATGTGGCAGGCGTTTTCTATATACTTGTCGGAGGTCTGGGGCTGGCCATGATG
GTGGCTTTGATAGAATTCTGTTACAAATCACGGGCAGAGTCCAAACGCATGAAACTCACAAAGAACACCC
AAAACTTTAAGCCTGCTCCTGCCACCAACACTCAGAATTATGCTACATACAGAGAAGGCTACAACGTGTA
TGGAACAGAGAGTGTTAAGATCTAG

Translation (894 aa):
MARQKKMGQSVLRAVFFLVLGLLGHSHGGFPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFH
LNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFVTPSFPTDADVQFVIQ
MRPALKGAILSLLGHYKWEKFVYLYDTERGFSILQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMD
RRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMV
QQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRGSAGDCLANPAVPWSQ
GIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPFSDQQISNDSASS
ENRTIVVTTILESPYVMYKKNHEQLEGNERYEGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIW
NGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIV
FAYIGVSVVLFLVSRFSPYEWHLEDNNEEPRDPQSPPDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSG
RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGSTKEFFRRSKIAVYE
KMWSYMKSAEPSVFTKTTADGVARVRKSKGKFAFLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGVATPK
GSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMM
VALIEFCYKSRAESKRMKLTKNTQNFKPAPATNTQNYATYREGYNVYGTESVKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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