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Report for CCDS13772.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13772.1 Public Homo sapiens 22 TANGO2 24 110 108 CCDS HistoryNCBI Gene:128989Re-query CCDS DB by CCDS ID:13772.1Re-query CCDS DB by GeneID:128989See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13772.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327374.9 ENSP00000332721.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327374.9Link to Ensembl Protein Viewer:ENSP00000332721.4Re-query CCDS DB by Nucleotide ID:ENST00000327374Re-query CCDS DB by Protein ID:ENSP00000332721
Original member Current member NCBI NM_001283106.3 NP_001270035.1 Accepted alive Link to Nucleotide Sequence:NM_001283106.3Link to Protein Sequence:NP_001270035.1Re-query CCDS DB by Nucleotide ID:NM_001283106Re-query CCDS DB by Protein ID:NP_001270035Link to BLAST:NP_001270035.1
Original member Current member NCBI NM_001283116.3 NP_001270045.1 Accepted alive Link to Nucleotide Sequence:NM_001283116.3Link to Protein Sequence:NP_001270045.1Re-query CCDS DB by Nucleotide ID:NM_001283116Re-query CCDS DB by Protein ID:NP_001270045Link to BLAST:NP_001270045.1
Original member Current member NCBI NM_152906.7 NP_690870.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152906.7Link to Protein Sequence:NP_690870.3Re-query CCDS DB by Nucleotide ID:NM_152906Re-query CCDS DB by Protein ID:NP_690870Link to BLAST:NP_690870.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001270035.1 276 Q6ICL3-1 276 100% 0 0
NP_001270045.1 276 Q6ICL3-1 276 100% 0 0
NP_690870.3 276 Q6ICL3-1 276 100% 0 0

Chromosomal Locations for CCDS 13772.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 20036799 20036854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20043355 20043443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20052465 20052584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20053437 20053551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20055943 20056013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20061530 20061683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20063338 20063442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 20064542 20064662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTGCATCATCTTCTTTAAGTTTGATCCTCGCCCTGTTTCCAAAAACGCGTACAGGCTCATCTTGGCAG
CCAACAGGGATGAATTCTACAGCCGACCCTCCAAGTTAGCTGACTTCTGGGGGAACAACAACGAGATCCT
CAGTGGGCTGGACATGGAGGAAGGCAAGGAAGGAGGCACATGGCTGGGCATCAGCACACGTGGCAAGCTG
GCAGCACTCACCAACTACCTGCAGCCGCAGCTGGACTGGCAGGCCCGAGGGCGAGGTGAACTTGTCACCC
ACTTTCTGACCACTGACGTGGACAGCTTGTCCTACCTGAAGAAGGTCTCTATGGAGGGCCATCTGTACAA
TGGCTTCAACCTCATAGCAGCCGACCTGAGCACAGCAAAGGGAGACGTCATTTGCTACTATGGGAACCGA
GGGGAGCCTGATCCTATCGTTTTGACGCCAGGCACCTACGGGCTGAGCAACGCGCTGCTGGAGACTCCCT
GGAGGAAGCTGTGCTTTGGGAAGCAGCTCTTCCTGGAGGCTGTGGAACGGAGCCAGGCGCTGCCCAAGGA
TGTGCTCATCGCCAGCCTCCTGGATGTGCTCAACAATGAAGAGGCGCAGCTGCCAGACCCGGCCATCGAG
GACCAGGGTGGGGAGTACGTGCAGCCCATGCTGAGCAAGTACGCGGCTGTGTGCGTGCGCTGCCCTGGCT
ACGGCACCAGAACCAACACTATCATCCTGGTAGATGCGGACGGCCACGTGACCTTCACTGAGCGTAGCAT
GATGGACAAGGACCTCTCCCACTGGGAGACCAGAACCTATGAGTTCACACTGCAGAGCTAA

Translation (276 aa):
MCIIFFKFDPRPVSKNAYRLILAANRDEFYSRPSKLADFWGNNNEILSGLDMEEGKEGGTWLGISTRGKL
AALTNYLQPQLDWQARGRGELVTHFLTTDVDSLSYLKKVSMEGHLYNGFNLIAADLSTAKGDVICYYGNR
GEPDPIVLTPGTYGLSNALLETPWRKLCFGKQLFLEAVERSQALPKDVLIASLLDVLNNEEAQLPDPAIE
DQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVDADGHVTFTERSMMDKDLSHWETRTYEFTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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