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Report for CCDS12935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12935.1 Public Homo sapiens 19 NLRP11 24 110 108 CCDS HistoryNCBI Gene:204801Re-query CCDS DB by CCDS ID:12935.1Re-query CCDS DB by GeneID:204801See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589093.6 ENSP00000466285.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000589093.6Link to Ensembl Protein Viewer:ENSP00000466285.1Re-query CCDS DB by Nucleotide ID:ENST00000589093Re-query CCDS DB by Protein ID:ENSP00000466285
Original member Current member NCBI NM_001394894.2 NP_001381823.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001394894.2Link to Protein Sequence:NP_001381823.1Re-query CCDS DB by Nucleotide ID:NM_001394894Re-query CCDS DB by Protein ID:NP_001381823Link to BLAST:NP_001381823.1
Original member Current member NCBI NM_145007.5 NP_659444.2 Accepted alive Link to Nucleotide Sequence:NM_145007.5Link to Protein Sequence:NP_659444.2Re-query CCDS DB by Nucleotide ID:NM_145007Re-query CCDS DB by Protein ID:NP_659444Link to BLAST:NP_659444.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381823.1 1033 P59045-1 1033 100% 0 0
NP_659444.2 1033 P59045-1 1033 100% 0 0

Chromosomal Locations for CCDS 12935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55785625 55785871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55788807 55788977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55789229 55789399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55792301 55792471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55796080 55796250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55801572 55801739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55807853 55808014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55808769 55810338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55817904 55818174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3102 nt):
ATGGCAGAATCGGATTCTACTGACTTTGACCTGCTGTGGTATCTAGAGAATCTCAGTGACAAGGAATTTC
AGAGTTTTAAGAAGTATCTGGCACGCAAGATTCTTGATTTCAAACTGCCACAGTTTCCACTGATACAGAT
GACAAAAGAAGAACTGGCTAACGTGTTGCCAATCTCTTATGAGGGACAGTATATATGGAATATGCTCTTC
AGCATATTTTCAATGATGCGTAAGGAAGATCTTTGTAGGAAGATCATTGGCAGACGAAACCGCAATCAGG
AGGCATGCAAAGCTGTCATGAGGAGAAAATTCATGCTGCAATGGGAAAGTCACACTTTTGGAAAATTTCA
TTATAAATTTTTTCGTGACGTTTCGTCAGATGTGTTCTACATACTTCAATTAGCCTATGATTCTACCAGC
TATTATTCAGCAAACAATCTCAATGTGTTCCTGATGGGAGAGAGAGCATCTGGAAAAACTATTGTTATAA
ATCTGGCTGTGTTGAGGTGGATCAAGGGTGAGATGTGGCAGAACATGATCTCGTACGTCGTTCACCTCAC
TGCTCACGAAATAAACCAGATGACCAACAGCAGCTTGGCTGAGCTAATCGCCAAGGACTGGCCTGACGGC
CAGGCTCCCATTGCAGACATCCTGTCTGATCCCAAGAAACTCCTTTTCATCCTCGAGGACTTGGACAACA
TAAGATTCGAGTTAAATGTCAATGAAAGTGCTTTGTGTAGTAACAGCACCCAGAAAGTTCCCATTCCAGT
TCTCCTGGTCAGTTTGCTGAAGAGAAAAATGGCTCCAGGCTGCTGGTTCCTCATCTCCTCAAGGCCCACA
CGTGGGAATAATGTAAAAACGTTCTTGAAAGAGGTAGATTGCTGCACGACCTTGCAGCTGTCGAATGGGA
AGAGGGAGATATATTTTAACTCTTTCTTTAAAGACCGCCAGAGGGCGTCGGCAGCCCTCCAGCTTGTACA
TGAGGATGAAATACTCGTGGGTCTGTGCCGAGTCGCCATCTTATGCTGGATCACGTGTACTGTCCTGAAG
CGGCAGATGGACAAGGGGCGTGACTTCCAGCTCTGCTGCCAAACACCCACTGATCTACATGCCCACTTTC
TTGCTGATGCGTTGACATCAGAGGCTGGACTTACTGCCAATCAGTATCACCTAGGTCTCCTAAAACGTCT
GTGTTTGCTGGCTGCAGGAGGACTGTTTCTGAGCACCCTGAATTTCAGTGGTGAAGACCTCAGATGTGTT
GGGTTTACTGAGGCTGATGTCTCTGTGTTGCAGGCCGCGAATATTCTTTTGCCGAGCAACACTCATAAAG
ACCGTTACAAGTTCATACACTTGAACGTCCAGGAGTTTTGTACAGCCATTGCATTTCTGATGGCAGTACC
CAACTATCTGATCCCCTCAGGCAGCAGAGAGTATAAAGAGAAGAGAGAACAATACTCTGACTTTAATCAA
GTGTTTACTTTCATTTTTGGTCTTCTAAATGCAAACAGGAGAAAGATTCTTGAGACATCCTTTGGATACC
AGCTACCGATGGTAGACAGCTTCAAGTGGTACTCGGTGGGATACATGAAACATTTGGACCGTGACCCGGA
AAAGTTGACGCACCATATGCCTTTGTTTTACTGTCTCTATGAGAATCGGGAAGAAGAATTTGTGAAGACG
ATTGTGGATGCTCTCATGGAGGTTACAGTTTACCTTCAATCAGACAAGGATATGATGGTCTCATTATACT
GTCTGGATTACTGCTGTCACCTGAGGACACTTAAGTTGAGTGTTCAGCGCATCTTTCAAAACAAAGAGCC
ACTTATAAGGCCAACTGCTAGTCAAATGAAGAGCCTTGTCTACTGGAGAGAGATCTGCTCTCTTTTTTAT
ACAATGGAGAGCCTCCGGGAGCTGCATATCTTTGACAATGACCTTAATGGTATTTCAGAAAGGATTCTGT
CTAAAGCCCTGGAGCATTCTAGCTGTAAACTTCGCACACTCAAGTTGTCCTATGTCTCGACTGCTTCTGG
TTTTGAAGACTTACTCAAGGCTTTGGCTCGTAATCGGAGCCTGACATACCTGAGTATCAACTGTACGTCC
ATTTCCCTAAATATGTTTTCACTTCTGCATGACATCCTGCACGAGCCCACATGCCAAATAAGTCATCTGA
GCTTGATGAAATGTGATTTGCGAGCCAGCGAATGTGAAGAAATCGCCTCTCTCCTCATCAGTGGCGGGAG
TCTGAGAAAACTGACCTTATCCAGCAATCCGCTGAGGAGCGACGGGATGAACATACTGTGTGATGCCTTG
CTTCATCCCAACTGCACTCTTATATCACTGGTGTTAGTCTTCTGCTGTCTCACTGAAAATTGCTGCAGCG
CCCTTGGAAGAGTGCTTCTGTTCAGCCCAACTCTAAGACAACTAGACCTGTGTGTGAATCGCTTAAAAAA
TTACGGAGTGTTGCATGTGACGTTTCCCTTGCTGTTTCCAACCTGTCAGTTAGAGGAGCTTCATCTGTCT
GGCTGTTTCTTTAGCAGCGATATCTGTCAATATATTGCCATAGTTATTGCTACTAATGAAAAACTGAGGA
GCCTGGAGATTGGGAGCAACAAAATAGAAGATGCAGGAATGCAGCTGCTATGTGGTGGTTTGAGACATCC
CAACTGCATGTTGGTGAATATTGGGCTAGAAGAGTGCATGTTAACCAGTGCCTGCTGTCGATCTCTTGCC
TCTGTTCTTACCACCAACAAAACACTAGAAAGACTCAACTTGCTTCAAAATCACTTGGGCAATGATGGAG
TTGCAAAACTTCTTGAGAGCTTGATCAGCCCAGATTGTGTACTTAAGGTAGTTGGGCTTCCATTAACTGG
CCTGAACACACAAACCCAGCAGTTGCTGATGACTGTAAAGGAAAGAAAACCCAGTTTGATCTTTCTGTCT
GAAACTTGGTCTTTAAAGGAAGGCAGAGAAATTGGTGTGACACCTGCTTCTCAGCCAGGTTCAATAATAC
CTAATTCTAATTTGGATTACATGTTTTTCAAATTTCCCAGAATGTCTGCAGCCATGAGAACGTCAAATAC
AGCATCTAGGCAACCCCTTTGA

Translation (1033 aa):
MAESDSTDFDLLWYLENLSDKEFQSFKKYLARKILDFKLPQFPLIQMTKEELANVLPISYEGQYIWNMLF
SIFSMMRKEDLCRKIIGRRNRNQEACKAVMRRKFMLQWESHTFGKFHYKFFRDVSSDVFYILQLAYDSTS
YYSANNLNVFLMGERASGKTIVINLAVLRWIKGEMWQNMISYVVHLTAHEINQMTNSSLAELIAKDWPDG
QAPIADILSDPKKLLFILEDLDNIRFELNVNESALCSNSTQKVPIPVLLVSLLKRKMAPGCWFLISSRPT
RGNNVKTFLKEVDCCTTLQLSNGKREIYFNSFFKDRQRASAALQLVHEDEILVGLCRVAILCWITCTVLK
RQMDKGRDFQLCCQTPTDLHAHFLADALTSEAGLTANQYHLGLLKRLCLLAAGGLFLSTLNFSGEDLRCV
GFTEADVSVLQAANILLPSNTHKDRYKFIHLNVQEFCTAIAFLMAVPNYLIPSGSREYKEKREQYSDFNQ
VFTFIFGLLNANRRKILETSFGYQLPMVDSFKWYSVGYMKHLDRDPEKLTHHMPLFYCLYENREEEFVKT
IVDALMEVTVYLQSDKDMMVSLYCLDYCCHLRTLKLSVQRIFQNKEPLIRPTASQMKSLVYWREICSLFY
TMESLRELHIFDNDLNGISERILSKALEHSSCKLRTLKLSYVSTASGFEDLLKALARNRSLTYLSINCTS
ISLNMFSLLHDILHEPTCQISHLSLMKCDLRASECEEIASLLISGGSLRKLTLSSNPLRSDGMNILCDAL
LHPNCTLISLVLVFCCLTENCCSALGRVLLFSPTLRQLDLCVNRLKNYGVLHVTFPLLFPTCQLEELHLS
GCFFSSDICQYIAIVIATNEKLRSLEIGSNKIEDAGMQLLCGGLRHPNCMLVNIGLEECMLTSACCRSLA
SVLTTNKTLERLNLLQNHLGNDGVAKLLESLISPDCVLKVVGLPLTGLNTQTQQLLMTVKERKPSLIFLS
ETWSLKEGREIGVTPASQPGSIIPNSNLDYMFFKFPRMSAAMRTSNTASRQPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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