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Report for CCDS10595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10595.1 Public Homo sapiens 16 LDAF1 24 110 108 CCDS HistoryNCBI Gene:57146Re-query CCDS DB by CCDS ID:10595.1Re-query CCDS DB by GeneID:57146See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233047.9 ENSP00000233047.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233047.9Link to Ensembl Protein Viewer:ENSP00000233047.4Re-query CCDS DB by Nucleotide ID:ENST00000233047Re-query CCDS DB by Protein ID:ENSP00000233047
Original member Current member EBI ENST00000261388.7 ENSP00000261388.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261388.7Link to Ensembl Protein Viewer:ENSP00000261388.3Re-query CCDS DB by Nucleotide ID:ENST00000261388Re-query CCDS DB by Protein ID:ENSP00000261388
Original member Current member EBI ENST00000572599.5 ENSP00000460687.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000572599.5Link to Ensembl Protein Viewer:ENSP00000460687.1Re-query CCDS DB by Nucleotide ID:ENST00000572599Re-query CCDS DB by Protein ID:ENSP00000460687
Original member Current member NCBI NM_001301769.2 NP_001288698.1 Accepted alive Link to Nucleotide Sequence:NM_001301769.2Link to Protein Sequence:NP_001288698.1Re-query CCDS DB by Nucleotide ID:NM_001301769Re-query CCDS DB by Protein ID:NP_001288698Link to BLAST:NP_001288698.1
Original member Current member NCBI NM_001301771.2 NP_001288700.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001301771.2Link to Protein Sequence:NP_001288700.1Re-query CCDS DB by Nucleotide ID:NM_001301771Re-query CCDS DB by Protein ID:NP_001288700Link to BLAST:NP_001288700.1
Original member Current member NCBI NM_020422.6 NP_065155.3 Accepted alive Link to Nucleotide Sequence:NM_020422.6Link to Protein Sequence:NP_065155.3Re-query CCDS DB by Nucleotide ID:NM_020422Re-query CCDS DB by Protein ID:NP_065155Link to BLAST:NP_065155.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288698.1 161 Q96B96-1 161 100% 0 0
NP_001288700.1 161 Q96B96-1 161 100% 0 0
NP_065155.3 161 Q96B96-1 161 100% 0 0

Chromosomal Locations for CCDS 10595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21161183 21161278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21170437 21170605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21174010 21174148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21179475 21179556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCAAAAGAGGAGCCCCAGAGTATCTCAAGGGACTTGCAGGAACTGCAGAAGAAGCTGTCTCTGCTGA
TAGACTCCTTCCAGAATAACTCAAAGGTGGTGGCCTTTATGAAGTCTCCAGTGGGTCAGTACTTGGACAG
CCATCCGTTTCTGGCCTTCACCTTGCTGGTGTTCATTGTCATGTCGGCCGTTCCTGTTGGATTCTTCCTG
CTCATCGTGGTGCTTACCACCCTGGCTGCTCTGCTGGGGGTCATAATATTGGAAGGATTGGTCATCTCTG
TGGGTGGCTTCTCACTGCTCTGCATCCTCTGTGGTTTGGGCTTCGTATCACTCGCCATGTCGGGGATGAT
GATAGCATCTTATGTAGTGGTCTCCAGCCTCATCAGCTGCTGGTTTTCTCCCAGGCCACTGACACAGCAA
AACACCAGTTGTGACTTTCTGCCAGCCATGAAGTCTGCAGAATTCGAGGGGCTTTACCAGGAATGA

Translation (161 aa):
MAKEEPQSISRDLQELQKKLSLLIDSFQNNSKVVAFMKSPVGQYLDSHPFLAFTLLVFIVMSAVPVGFFL
LIVVLTTLAALLGVIILEGLVISVGGFSLLCILCGLGFVSLAMSGMMIASYVVVSSLISCWFSPRPLTQQ
NTSCDFLPAMKSAEFEGLYQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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