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Report for CCDS49581.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49581.1 Public Mus musculus 15 Dnajc21 23 108 98 CCDS HistoryNCBI Gene:78244Re-query CCDS DB by CCDS ID:49581.1Re-query CCDS DB by GeneID:78244See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49581.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136591.7 ENSMUSP00000116865.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136591.7Link to Ensembl Protein Viewer:ENSMUSP00000116865.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136591Re-query CCDS DB by Protein ID:ENSMUSP00000116865
Original member NCBI NM_030046.2 NP_084322.2 Updated not alive Link to Nucleotide Sequence:NM_030046.2Link to Protein Sequence:NP_084322.2Re-query CCDS DB by Nucleotide ID:NM_030046Re-query CCDS DB by Protein ID:NP_084322
Current member NCBI NM_030046.3 NP_084322.2 Accepted alive Link to Nucleotide Sequence:NM_030046.3Link to Protein Sequence:NP_084322.2Re-query CCDS DB by Nucleotide ID:NM_030046Re-query CCDS DB by Protein ID:NP_084322Link to BLAST:NP_084322.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084322.2 531 E9Q8D0 531 100% 0 0

Chromosomal Locations for CCDS 49581.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 10447065 10447226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10447696 10447771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10449576 10449748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10451555 10451597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10452206 10452364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10454770 10454857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10459955 10460106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10461120 10461424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10461876 10461998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10462223 10462346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10463887 10463980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 10470265 10470361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1596 nt):
ATGAAGTGTCACTACGAGGCGCTGGGGGTGCGGCGCGACGCCAGCGAGGAGGAGCTCAAGAAGGCCTATC
GGAAGCTGGCCCTGAGGTGGCACCCGGATAAAAATCTGGACAATGCCGCAGAAGCAGCTGAGCAGTTTAA
ATTAATCCAAGCTGCATATGACGTCTTAAGTGACCCTCAGGAAAGAGCGTGGTACGATAACCACCGAGAG
GCCTTACTTAAAGGAGGGCTCGATGGGGAATATCAAGATGACAGCTTAGATCTGCTTCATTATTTCACGG
TTACCTGTTATTCTGGTTATGGGGACGATGAAAGGGGGTTCTATGCAGTGTATCGTGTTGTCTTTGAGCT
GATTGCAAAAGAAGAACTGGAGTGTATGTCAGAGGGAGATGTTGAGGATTTTCCAACCTTCGGCGACTCC
CAGAGCGACTATGACACGGTGGTCCACCCTTTCTACGCTCACTGGCAGAGTTTCTGCACACAAAAGAATT
TTTCCTGGAAGGAAGAGTATGATACCCGGCAAGCCTCGAACCGCTGGGAAAAACGAGCCATGGAAAAAGA
AAACAAAAAAATTCGAGACAGAGCAAGGAAAGAGAAAAATGAACTGGTGCGCCAGCTGGTAGCCTTCATT
CGTAAACGAGATAAGAGAGTGCAGGCCCATCGGAAGCTTGTGGAGGAGCAGAACGCAGAGAAGGCGAGGA
AGGCAGAGGAGATGAGGAGGCAGCAGAAGCTGAAGCAAGCCAAGCTGGCAGAGCAGTACAGAGAGCAGAG
CTGGATGACCATGGCCAATTTGGAGAAGGAGCTCCAGGAGATGGAAGCAAGGTACGAGAAGGAGTTTGGA
GATGGATCAGATGAAAACGAAGTGGAGGATCAGGAGCCCAGAAACGGATTGGATGGCAAGGACAGCGAGG
AGGCTGAGGAGGCTGAGCTTTACCAGGACCTTTACTGCCCAGCTTGTGACAAATCCTTCAAGACAGAAAA
GGCCATGAAGAATCACGAGAAGTCAAAGAAACATCGGGAAATGGTTGCCTTGTTAAAACAGCAGTTGGAG
GAGGAGGAAGAACAGTTTTCAGGAGTTCAAATGGATGAAAATGTATTGAATGCCAATTCTGAGGAGGAAA
TGGAAGATACACCAAAGCAGAAGCTTTCTAAAAAACAGAAGAAAAAGAAACAGAAATCAGCACAGAATTT
TGATGACAATTTCAATGAAAATGGAACTGAAGAAGGAGGAAAGATTGCTCCAGAAAAGACTAAGTCAAAT
GAAGACAATGCCAAAGAATTAGAAAATAGGCCCCAAGAAAATACCTGTATTACAGAGACCACAGAAGCCT
GTGAGGATCCAAAAAGCGAAGCTAAAAGTGTTCCTAAATCCAAAGGAAAGAAAACCAAAGATGTGAAAAA
ATCTGTCAAAGCACCTGCTGAAGCACAGCCAGTGAGTGATGTCCTCATCAGCTGTGCGACTTGCCACAGT
GAATTTCCATCCCGGAATAAACTGTTTGATCATCTAAAGGCTACTGGTCATGCAAGAGCACCTTCAGCCA
CAGCATCTTTAAACAGTGTAACTAGGAACAAGAAAGAGAAGCGTAGAAGTAGATAG

Translation (531 aa):
MKCHYEALGVRRDASEEELKKAYRKLALRWHPDKNLDNAAEAAEQFKLIQAAYDVLSDPQERAWYDNHRE
ALLKGGLDGEYQDDSLDLLHYFTVTCYSGYGDDERGFYAVYRVVFELIAKEELECMSEGDVEDFPTFGDS
QSDYDTVVHPFYAHWQSFCTQKNFSWKEEYDTRQASNRWEKRAMEKENKKIRDRARKEKNELVRQLVAFI
RKRDKRVQAHRKLVEEQNAEKARKAEEMRRQQKLKQAKLAEQYREQSWMTMANLEKELQEMEARYEKEFG
DGSDENEVEDQEPRNGLDGKDSEEAEEAELYQDLYCPACDKSFKTEKAMKNHEKSKKHREMVALLKQQLE
EEEEQFSGVQMDENVLNANSEEEMEDTPKQKLSKKQKKKKQKSAQNFDDNFNENGTEEGGKIAPEKTKSN
EDNAKELENRPQENTCITETTEACEDPKSEAKSVPKSKGKKTKDVKKSVKAPAEAQPVSDVLISCATCHS
EFPSRNKLFDHLKATGHARAPSATASLNSVTRNKKEKRRSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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