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Report for CCDS27932.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27932.1 Public Mus musculus 16 Ppl 23 108 98 CCDS HistoryNCBI Gene:19041Re-query CCDS DB by CCDS ID:27932.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27932.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035672.4 ENSMUSP00000039360.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035672.4Link to Ensembl Protein Viewer:ENSMUSP00000039360.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000035672Re-query CCDS DB by Protein ID:ENSMUSP00000039360
Original member Current member NCBI NM_008909.2 NP_032935.2 Accepted alive Link to Nucleotide Sequence:NM_008909.2Link to Protein Sequence:NP_032935.2Re-query CCDS DB by Nucleotide ID:NM_008909Re-query CCDS DB by Protein ID:NP_032935Link to BLAST:NP_032935.2

Chromosomal Locations for CCDS 27932.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5087165 5089828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5091845 5091937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5092365 5092481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5093196 5093279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5094409 5094559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5096626 5096819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5097645 5097783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5097875 5098053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5099983 5100140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5100331 5100428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5101374 5101525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5102294 5102440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5102556 5102678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5104451 5104546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5104674 5104781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5104864 5105025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5105923 5105964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5106051 5106170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5106762 5106882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5107457 5107611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5112992 5113091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5132282 5132343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5265 nt):
ATGCACTCGCTCTTCAGGAAGAGAAACAAAGGCAAATACAGCCCAACGGTGCAGACGCGGAGCATCTCCA
AC
AAGGAACTCTCAGATCTGATTGAGCAGCTGCAGAAGAATGCAGACCAGGTGGAAAGGAACATTGTGGA
C
ACCGAGGCCAAGATGCAGAGCGACTTGGCCCGGATGCAAGAGGGGCAGCTCCCTGAGCACCGGGACGCG
GCC
CTGCAGAACGTGTCTGACTCAGAAAAGCTGCTGTACGTGCTGGAGGCAGATTCGGCCATCGCCAAGC
AC
ATGAAGCACCCACAGGGGGACATGATCGCCGAGGACATCCGCCAGCTGAAAGAGCGCGTGACCAACCT
G
CGGGGGAAACACAAGCAGATGTACAGCCTGGCAGTGAAAGAGGCCGACCCGAGAGTCAACTGGGACACA
CTG
GTGGACGAGAAGCTGGACAAGCTGAGCAGCCAGAGCTTTGGGACTGACCTTCCTCTGGTGGATAGCC
AG
GTGGAGCAACACAACATCTTCCACAATGAAGTCAAAGCCATCGGGCCCCACCTGGCCAAGGACAAGGA
G
CAGAACAGTGAACTCCAAGCCAAGTATCAGAAGTTGCTGACAGCATCACAGGCACGGCAGCAGCACCTG
AGC
TCGCTGCAGGATTACATGCAGCGCTGCACCAATGAGCTGTACTGGCTGGACCAGCAAGCCAAGGGCC
GC
ATGCAGTATGACTGGAGCGACCGCAACCTCGACTACCCCAGCCGCCGCCGCCAGTACGAGAATTTCAT
C
AACCGGAACCTGGAGGCCAAAGAAGAAAGAATCAACAAACTGCACACTGAAGGTGACCAACTGCTGACA
GCT
GAGCACCCAGGGAGGAACTCCATTGAGGCACACATGGAGGCTGTGCATGCTGAGTGGAAGGAGTACC
TG
AACCTGCTCATCTGTGAGGAGAGCCATCTGAAATACATGGAAGACTACCACCAATTTCACAAAGACAT
G
AAGGATGCTCAGGAGCTGCTACGCAAGGTGGACTCAGACTTGAACCAGAAATATAGCCCTGACTTCAAA
GAC
CGGTATCAGATAGAGCTGTTGCTTCGGGAACTGGATGACCAGGAGAAGGCTCTGGACAAGTATGAGG
AT
GTGGTGCGAGGGCTGCAGAGGCGAGGGCAGCAAGTGGTGCCACTCAAGTACCGCCGCGAGACGCCGCT
C
AAGCCCATCCCTGTGGAGGCTCTCTGTGACTTTGAGAGTGACCAGGGCCTCATCTCGCGGGGCTATAGC
TAC
ACACTGCAGAAGAACAACGGGGAGAGCTGGGAGCTGACAGACAGCACTGGGAAGAAGCTGGCTGCCC
CA
GCCGTCTGCTTCATCATTCCCCCCACCGACCCCGAGGCCTTGGCTCTTGCTGACAGCCTGGGCAGCCA
G
TACCGAAGTGTGAGGCAGAAGGCGACTGGGAGCAAACATGCACTCCAGCAGCGGCATGAGGTGCTAAGG
ACG
GAGAACCCTGGAGATGCCTCTGATCTTCAGGGACGACAGCTGCTGGCTGGCTTGGACAAAGTGGCCA
GT
GACCTGGACCGGCAGGAAAAGGCTATCACAGGGATCCTACGGCCACCACTTGAGCAGGGACGGGCAAT
T
GAGGATAGTGCGGAGCGGGCCAAGGGTCTCAAGAACATTACCAATGAGCTGCTACAGATTGAGCCAGAG
AAG
ACGCAGTGCACAGCCGAGTGTGAAGCCTTTGTGCAGGCCCTCCCGGCCAGCGGCACCGCACCCTTGC
TG
AAGACCCGGGTAGAAGACACCAACCAGAAATATGAGCGACTAGTATGGTTGCTAGAGGCAGCCCAGGA
G
AAGGTGGACGTGGCCAACCGCCTGGAGAACAGTCTGCAGCGGGGCAGGGAGCTGCTGGCCTCATACGAG
AAC
AGGCTGATTCAGGACGACACAATGCCTGAAAGTGGTCATGTGTTGGACAGCAAGAGGCAGGAGCTGG
AG
GCCATGGCTTCTGAGCTGCAGGCCCACAAGTCCCTCCTGGGTGAGGTGGAACAGAACCTACAGGTGGC
C
AAGCAGTGTTCCAGCTCACTGGCCAGCCGCTTCCAAGAGCACTGCCCTGACCTGGAGCGGCAGGAGGCC
GAG
GTGCACAAGCTCAACCAACGTTTCAACAACCTCAGCCAGCAGGTGGAACGGAGGGCCCAGAGCCTGC
AG
AGTGCCAGGGCTGCCTACGATGAATACTGCAGTGGTTACAACCGTGTGCTCCAGTTTTTGGCCAAGAC
T
CCCAGTTATGAGCCCCAGGAGACAGACAGCCTCGGCCAGATGGAGACCAAGCTCAAGAACCAGAAGAAC
TTG
CTTGATGAGCTAGCAAGCAGGGAACAGGAGGTGCAGAAGGTCTATGCAGATTCCCAGCAGTACCAGC
AA
GCGGTGAAGGACTATGAACTTGAAGCAGAGAAGCTAAGGTCCTTGCTGGACCTGGAGAATGGACGGAA
C
AGCCATGTGAACAAGAGAGCCAGGCTGCAGTCTCCTGCTGCCAAAGTGAAGGAAGAGGAAGCTGCTCTT
GCT
GCCAAGTTCACAGAGGTTAATGCCATCAACAGACAGAGGCTACAGAATTTGGAGTTTGCACTGAATC
TC
TTGAGACAGCAACCAGAAGCAGGAGTGACCCATGAGACCCTACAAGGGGGAAAGCTAAGCTCTGGCAT
G
GAGGAAACATGGAAGATTAAGAAGGAACTGGAGGAGGAGATAGAGCGAAGGCAACAGCTGGAAAATGAG
GTC
AAGAGTGCCCAGGAGGAAATCCAGACCCTGAAGGATCAGGGGCCTCAGGAGTCATTGGTGAGGAAGG
AG
GTGCTGAAGAAGGTGCCAGACCCTGCCCTGGAGGAGAGCTTCCAGCAGCTGCAGCAGACGCTGGCTGA
G
GAACAGCACAAGAACCAGCTATTGCAGGAGGAGCTGGGAGCACTGCAGCTCCGGCTGCAGGCTCTAGAG
CAG
GAGACCAGGGATGGGGGACAGGAGTATGTGGTCAAGGAGGTCTTGCGCATTGAGCCAGACAGAGCCC
AG
GAGGATGAGGTCTTGCAGCTTCGGGAGGAGCTGGAGGCACTGCGGCGCCAGAAAGGCGCCCGAGAGGC
T
GAAGTGCTACTCTTACAGCAGCGTGTAGCAGCCCTGGCTGCTGAGAAGAGCAGGGTGCAGGAAAAGGTC
ACT
GAGAGAGAGGTGGTAAAGCTACAGAATGACCCCCAACTGGAGGCAGAATACCGGAGGCTGCAGGAGG
AG
CACCAGCGGGAGGGCACACTCAGGGAGAAGCAGGAGGAGGAGCTGAGTTTCCTACAGGCTAAGCTCAG
G
AGACTGGAGAAAGAACGAGCCATGGCAGAAGGCAAGATCACTGTCAAAGAGGTGCTCAAGGTAGAGAAA
GAT
GCAGCTGTGGAGAGAGAAGTCAATGACCTCACCCGCCAGTATGAGGACGAGGCTGCCAAGGCACGCT
CT
GGCCAGCGGGAGAAGACAGAACTTCTCAGAAAGATATGGGCCCTGGAAGAGGAAAATGCTAAGGTGGT
G
GTACAGGAGAAGGTCCGAGAGATCGTGCGGCCAGATCCCAAGGCAGAGAGTGAAGTGGCCAACCTCCGC
CTG
GAGCTGGTGGAGCAGGAGCGCAAATTCAGGGGTGCTGAGGAGCAGCTGAAGAGCTACCAGAGTGAGC
TG
GAGGCCCTACGGAACCGTGGACCACAGGTAGAAGTCAAAGAGGTGACCAAAGAGGTCATTAAATATAC
A
ACTGACCCAGAGACAGAGCAGGAACTCCAGAGGCTCAGGGAGGAGATCATGGACAAGACCAGGTTAATA
GAA
AGGTGTGACCTAGAGATTTACCAGCTGAAGCAGGAGATCCAGGCCCTTAAGGACACCAAGCCACAGG
TG
CAGACTAGAGAGGTAGTCCAGGAGATCCTGCAGTTCCAGGAAGACCCCCAAACCAAGAAGGAGGTAGA
G
TCTCTGCGTATACAGCTGTCAGAAGAACAGAAGAAACAGGTGGACCTGGAAGGGGAGCGGGCATCCCAG
GAA
GAGAAGATCAAACGCAAGGAGGAAGAGCTGGCACAGGGGAAGGAAAGGGTTGTACGCCAGGAGGTAG
TA
CAGTATGAAGATGAGCCAGATTTGCGAGCTGAGGTGACTGCCTTCACAAACAGCATTGATGCTGAGCT
G
CGGCAGATTGATAAACTGCATGTGGAGCTACGGCGGTTACAGCATCGCCGAGCAGAGCTGGAGAGGCAG
TTG
GAGGAGCTGGAGCGGGAGAGGCAGGCACGTAGGGCAGCCGAGCTGGAGGTACAGAGGCTGCAACAGC
GG
CTGGCTGCATTGGAGCAGGAGGAGGCCAAGACTGGTGAGAAGGTGACCCACACACAAAAGGTGGTGCT
G
CAGCAGGACCCACAGCAGACCAGGGAGCATGCCCTGCTCCGAGCCCAGCTGGAGGAAGAGCGGCACCGG
AGG
CAGCTACTGGAGGGTGAGCTTGAGCCGCTGCGTAGAAAGTTGGCTGCCCTGGAGAAGGCAGAGATCA
AA
GAAAAGGTGGTCTTCTCTGAGAGTGTCCAGGTAGAAAAAGGTGACACTGAGCAAGAGATCCAGCGCCT
C
AAGAAGAGCCTGGAAGAGGAGAGCCAGAGCAAGAGGGAGCTGGATTCAGAGGTGACCCGGCTAGAAGCC
AAG
TTATCTGAGCTAGAATTCTATAATTCCAAGTCATCCAAGGAACTGGACTTCCTGAGAGAAGAAAACC
AC
AAGCTACAGCTAGAGCGGCAAAACCTGCAGCTAGAGACCCGGAGACTCCAATCAGAGATTGAGATGGC
A
GCAACAGAAACTCGAGATCTGAAGAACATAACCACGATAGACTCTGGGACCCACCTAAACTCTAGGCTG
TGG
TCCCTAGAGAAGGAACTGGATGACCTCAAGAAGATGTCCAAGGACAAGGATCTGGAGATCGATGAAC
TA
CAGAGGCGCCTGGGCTCTGTGGCTGTCAAGAGAGAGCAGAGGGAGAACCACCTGAGGCGCTCCATAGT
G
GTCATAGACCCTGACACAGGTCGTGAGCTGTCCCCAGAGGAGGCTCACCGGGCTGGGCTTATCGACTGG
AAA
ATGTTTGTGAAGCTCAGAAGCCAGGAGTGCGACTGGGAGGAGATATCAGTGAAAGGTCCTAATGGGG
AG
TCATCAGTAATTCATGACAGGAAGTCAGGCAAGAAGTTCTCCATTGAGGACGCTCTTCAGAGTGGCAG
G
CTAACCGCTGCTCAATATGACCGCTATGTCAACAAGGATATGTCCATTCAGGAGCTGGCAGTCTTGGTG
TCT
GGGCAGAAGTAG


Translation (1754 aa):
MHSLFRKRNKGKYSPTVQTRSISNKELSDLIEQLQKNADQVERNIVDTEAKMQSDLARMQEGQLPEHRDA
A
LQNVSDSEKLLYVLEADSAIAKHMKHPQGDMIAE
DIRQLKERVTNLRGKHKQMYSLAVKEADPRVNWDT
L
VDEKL
DKLSSQSFGTDLPLVDSQVEQHNIFHNEVKAIGPHLAKDKEQNSELQAKYQKLLTASQARQQHL
S
SLQDYMQRCTNELYWLDQQAKGRMQYDWSDRNLDYPSRRRQYE
NFINRNLEAKEERINKLHTEGDQLLT
A
EHPGRNSIE
AHMEAVHAEWKEYLNLLICEESHLKYMEDYHQFHKDMKDAQELLRKVDSDLNQKYSPDFK
D
RYQIELLLRELD
DQEKALDKYEDVVRGLQRRGQQVVPLKYRRETPLKPIPVEALCDFESDQGLISRGYS
Y
TLQKNNGESWELTDSTGKKLAAPAVCFIIPPTDPEALALAD
SLGSQYRSVRQKATGSKHALQQRHEVLR
T
ENPG
DASDLQGRQLLAGLDKVASDLDRQEKAITGILRPPLEQGRAIEDSAERAKGLKNITNELLQIEPE
K
TQCTAECEAFVQALPASGTAPLLKTRVEDTNQKYERLVWLLEAAQE
KVDVANRLENSLQRGRELLASYE
N
RLIQDDTMPESGHVLDSKRQELE
AMASELQAHKSLLGEVEQNLQVAKQCSSSLASRFQEHCPDLERQEA
E
VHKLNQRFNNLSQQVER
RAQSLQSARAAYDEYCSGYNRVLQFLAKTPSYEPQETDSLGQMETKLKNQKN
L
LDELASREQEVQKVYADSQQYQQAVK
DYELEAEKLRSLLDLENGRNSHVNKRARLQSPAAKVKEEEAAL
A
AKFTEVNAINRQRLQNLEFALNLLRQ
QPEAGVTHETLQGGKLSSGMEETWKIKKELEEEIERRQQLENE
V
KSAQEEIQTLKDQGPQESLVRKEVLKKVPDPALEESFQQLQQTLAEEQHKNQLLQEELGALQLRLQALE
Q
ETRDGGQEYVVKEVLRIEPDRAQEDEVLQLREELEALRRQKGAREAEVLLLQQRVAALAAEKSRVQEKV
T
EREVVKLQNDPQLEAEYRRLQEEHQREGTLREKQEEELSFLQAKLRRLEKERAMAEGKITVKEVLKVEK
D
AAVEREVNDLTRQYEDEAAKARSGQREKTELLRKIWALEEENAKVVVQEKVREIVRPDPKAESEVANLR
L
ELVEQERKFRGAEEQLKSYQSELEALRNRGPQVEVKEVTKEVIKYTTDPETEQELQRLREEIMDKTRLI
E
RCDLEIYQLKQEIQALKDTKPQVQTREVVQEILQFQEDPQTKKEVESLRIQLSEEQKKQVDLEGERASQ
E
EKIKRKEEELAQGKERVVRQEVVQYEDEPDLRAEVTAFTNSIDAELRQIDKLHVELRRLQHRRAELERQ
L
EELERERQARRAAELEVQRLQQRLAALEQEEAKTGEKVTHTQKVVLQQDPQQTREHALLRAQLEEERHR
R
QLLEGELEPLRRKLAALEKAEIKEKVVFSESVQVEKGDTEQEIQRLKKSLEEESQSKRELDSEVTRLEA
K
LSELEFYNSKSSKELDFLREENHKLQLERQNLQLETRRLQSEIEMAATETRDLKNITTIDSGTHLNSRL
W
SLEKELDDLKKMSKDKDLEIDELQRRLGSVAVKREQRENHLRRSIVVIDPDTGRELSPEEAHRAGLIDW
K
MFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEDALQSGRLTAAQYDRYVNKDMSIQELAVLV
S
GQK




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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