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Report for CCDS58981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58981.1 Public Homo sapiens 5 PCDHGA9 24 110 108 CCDS HistoryNCBI Gene:56107Re-query CCDS DB by CCDS ID:58981.1Re-query CCDS DB by GeneID:56107See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58981.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000573521.2 ENSP00000460274.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000573521.2Link to Ensembl Protein Viewer:ENSP00000460274.1Re-query CCDS DB by Nucleotide ID:ENST00000573521Re-query CCDS DB by Protein ID:ENSP00000460274
Original member Current member NCBI NM_018921.3 NP_061744.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018921.3Link to Protein Sequence:NP_061744.1Re-query CCDS DB by Nucleotide ID:NM_018921Re-query CCDS DB by Protein ID:NP_061744Link to BLAST:NP_061744.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061744.1 932 Q9Y5G4-1 932 100% 0 0

Chromosomal Locations for CCDS 58981.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141402953 141405376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141494807 141494865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141505393 141505481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 141510947 141511173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2799 nt):
ATGGCAGCTCCAACCAAATGCCAGCTCCGCGGAAGATTAGTCCTGCTATGCTCGCTCCTGGGGATGCTAT
GGGAGGCCAGGGCCAGTCAGATTCGCTACTCAGTGCCTGAAGAGACAGAAAAGGGCTATATTGTGGGCAA
CATCTCCAAGGACCTGGCTCTGGAGCCCCGGGAGCTGGCGGAGCGCCGAGTCCGCATCGTCTCTAGAGGT
AGGACGCAGCTTTTCTCTCTGAACCCGCGCAGCGGCACCTTGGTCACCGCGGGTAGGATAGACCGGGAGG
AGCTCTGTGCTCAGAGCCCGCGGTGTCTGGTGAACTTTAAAGTCCTGGTTGAAGACAGAGTGAAACTGTA
CGGAATAGAAATAGAAGTAACTGATATTAACGACAGCGCCCCAAAGTTCCAGGCCGAAAGTCTGGAAGTA
AAAATTAACGAAATCGCGGTTCCTGGAGCACGTTATCCACTTCCAGAAGCTATTGATCCGGATGTTGGCG
TGAACTCCCTCCAGAGCTACCAGCTCAGCCCCAATCACCACTTCTCCCTGAACGTGCAGACTGGAGACAA
TGGAGCCATAAACCCAGAGCTGGTGCTGGAGCGCGCCCTGGACAGGGAGGAGGCAACTGCCCACCACCTG
GTCCTCACGGCCTCGGATGGCGGCGAGCCGCGTCGCTCCAGCACAGTGCGCATCCATGTGACAGTGTTGG
ATACAAATGATAATGCCCCGGTTTTTGCTCAACGGATTTACCGAGTTAAAGTCCTTGAGAACGTGCCCCC
AGGCACCTGGCTGCTTACTGCAACAGCCAGCGACCTGGATGAGGGAATCAACGGAAAAGTGGCATACAAA
TTCTGGAAAATTAATGAAAAACAATCTCTGCTATTCCAGCTTAATGAAAATACTGGGGAAATATCAACAG
CAAAAAGTCTAGATTATGAAGAATGTTCATTTTATGAAATGGAAATACAAGCTGAAGATGGTGGGGGATT
GAAAGGGTGGACAAAAGTGCTCATTTCGGTGGAAGATGTAAATGACAATAGACCTGAAGTGACCATTACA
TCTCTGTTTAGCCCAGTGAGAGAAGACGCACCTCAGGGAACAGTAATTCTTCTTTTCAATGCTCATGACC
GAGACTCCGGGAAGAATGGTCAAGTTGTCTGTTCTATCCAGGAGAATCTATCTTTTACATTAGAAAATTC
AGAAGAAGATTATTACAGATTGTTGACGGCCCAAATTCTTGACCGAGAAAAAGCCTCAGAATATAATATC
ACGGTGACTGCAACAGACAGAGGAACTCCGCCCCTGTCCACAGAAATTCACATCACCCTGCAAGTGACTG
ACATCAATGATAATCCACCTGCTTTCTCTCAAGCCTCCTACTCAGTCTACCTCCCGGAAAACAACGCCAG
AGGTACTTCCATCTTCTCCGTGATTGCCTATGACCCTGATAGCAATGAGAATTCTAGAGTTATTTACTCC
TTGGCAGAGGATACCATCCAAGGGTCTCCTCTCTCCACCTATGTCTCTATTAACTCAGACACTGGTGTGC
TGTATGCTCTGTGCTCCTTTGACTATGAGCAGTTTAGAGATTTGCAAATGCAGGTGACGGCAAGTGACAG
TGGAAGCCCACCACTTAGCAGCAATGTGTCATTGAGACTGTTTGTTTTGGACCAGAATGACAATGCCCCA
GAAATCCTGTACCCTGCCCTCCCCACTGATGGTTCTACTGGTGTGGAGCTGGCACCCCGCTCTGCAGAGC
CTGGCTACCTGGTGACCAAGGTGGTGGCAGTGGACAGAGACTCAGGCCAGAATGCTTGGCTCTCCTACCG
CCTATTCAAGGCCAGTGAGCCAGGGCTCTTCTCGGTGGGGCTGCACACAGGTGAAGTGCGCACAGCTCGG
GCCCTGCTAGATAGAGATGCGCTCAAACAGAGCCTTGTGGTGGCTGTACAGGACCATGGCCAGCCCCCTC
TCTCGGCCACTGTCACGCTCACAGTAGCCATAGCTGACAGCATCCCAGACATCCTGGCTGACCTGGGCAG
TCTTCAGATCCCTGCAGACCTGGAGGCCTCAGACCTTACCCTCTACCTCGTTGTGGCTGTGGCAGTCGTC
TCCTGTGTCTTCCTCACCTTCGTTATCACGCTGCTGGCCCTCAGGCTGAGGCACTGGCACTCCTCGCATC
TGCTGCGGGCTACCAGTGATGGGTTGGCTGGTGTGCCCACCTCACACTTTGTGGGTGTAGATGGGGTTCG
AGCTTTCCTACAGACCTATTCTCAGGAGTTCTCCCTCACCGCTGACTCAAGGAAGAGTCACCTGATCTTC
CCCCAGCCCAACTATGCAGACACACTCATCAGCCAGCAGAGCTGTGAGAAAAATGAGCCTTTGTGCGTCT
CTGTTGATTCCAAGTTTCCTATAGAAGACACCCCTTTGGTTCCGCAAGCCCCGCCCAACACGGACTGGCG
TTTCTCTCAGGCCCAGAGACCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAAC
AACCAGTTTGACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCT
CCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTGCAGCA
CGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACCAACGCAGCTGGCAAG
CGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAGTCGGGCAAGAAGGAGAAGAAGTAA

Translation (932 aa):
MAAPTKCQLRGRLVLLCSLLGMLWEARASQIRYSVPEETEKGYIVGNISKDLALEPRELAERRVRIVSRG
RTQLFSLNPRSGTLVTAGRIDREELCAQSPRCLVNFKVLVEDRVKLYGIEIEVTDINDSAPKFQAESLEV
KINEIAVPGARYPLPEAIDPDVGVNSLQSYQLSPNHHFSLNVQTGDNGAINPELVLERALDREEATAHHL
VLTASDGGEPRRSSTVRIHVTVLDTNDNAPVFAQRIYRVKVLENVPPGTWLLTATASDLDEGINGKVAYK
FWKINEKQSLLFQLNENTGEISTAKSLDYEECSFYEMEIQAEDGGGLKGWTKVLISVEDVNDNRPEVTIT
SLFSPVREDAPQGTVILLFNAHDRDSGKNGQVVCSIQENLSFTLENSEEDYYRLLTAQILDREKASEYNI
TVTATDRGTPPLSTEIHITLQVTDINDNPPAFSQASYSVYLPENNARGTSIFSVIAYDPDSNENSRVIYS
LAEDTIQGSPLSTYVSINSDTGVLYALCSFDYEQFRDLQMQVTASDSGSPPLSSNVSLRLFVLDQNDNAP
EILYPALPTDGSTGVELAPRSAEPGYLVTKVVAVDRDSGQNAWLSYRLFKASEPGLFSVGLHTGEVRTAR
ALLDRDALKQSLVVAVQDHGQPPLSATVTLTVAIADSIPDILADLGSLQIPADLEASDLTLYLVVAVAVV
SCVFLTFVITLLALRLRHWHSSHLLRATSDGLAGVPTSHFVGVDGVRAFLQTYSQEFSLTADSRKSHLIF
PQPNYADTLISQQSCEKNEPLCVSVDSKFPIEDTPLVPQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPN
NQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLTNAAGK
RDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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