NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12961.1 Public Homo sapiens 19 ZNF671 24 110 108 CCDS HistoryNCBI Gene:79891Re-query CCDS DB by CCDS ID:12961.1Re-query CCDS DB by GeneID:79891See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317398.10 ENSP00000321848.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317398.10Link to Ensembl Protein Viewer:ENSP00000321848.5Re-query CCDS DB by Nucleotide ID:ENST00000317398Re-query CCDS DB by Protein ID:ENSP00000321848
Original member Current member NCBI NM_024833.3 NP_079109.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024833.3Link to Protein Sequence:NP_079109.2Re-query CCDS DB by Nucleotide ID:NM_024833Re-query CCDS DB by Protein ID:NP_079109Link to BLAST:NP_079109.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079109.2 534 Q8TAW3 534 100% 0 0

Chromosomal Locations for CCDS 12961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57720481 57721697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57722316 57722438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57723214 57723340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57727391 57727528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGTTGTCCCCAGTGTCCCGAGACGCGTCTGATGCTCTGCAGGGACGGAAGTGCCTGCGTCCCCGATCGA
GACGCCTGCCGCTCCCGGCAGCTGTCCGCGCCCACGGTCCTATGGCGGAGCTAACGGACTCCGCGCGGGG
CTGTGTGGTCTTTGAGGATGTGTTTGTATACTTCTCTCGGGAAGAATGGGAGCTTCTTGATGATGCTCAG
AGACTTTTGTACCATGATGTGATGCTGGAGAACTTTGCACTTTTAGCCTCACTGGGAATTGCATTTTCCA
GATCACGTGCAGTCATGAAACTAGAGCGAGGAGAAGAGCCCTGGGTGTATGACCAGGTGGATATGACTTC
AGCCACAGAAAGAGAGGCCCAGAGGGGACTTAGACCTGGTTGTTGGCATGGAGTGGAGGATGAAGAGGTA
TCTTCTGAGCAGAGCATTTTTGTAGCAGGAGTGTCAGAGGTCAGGACTCTCATGGCAGAGCTGGAGTCTC
ACCCATGTGACATATGTGGCCCAATATTGAAAGATACCTTACACCTGGCTAAATACCATGGGGGAAAAGC
CAGGCAGAAACCATACTTGTGTGGGGCATGTGGAAAGCAATTCTGGTTCAGTACAGACTTTGACCAGCAC
CAGAACCAGCCCAATGGAGGGAAACTTTTCCCAAGGAAGGAGGGCAGAGACTCTGTGAAAAGCTGCAGAG
TCCATGTGCCAGAGAAGACCCTCACATGTGGGAAAGGTAGGAGAGACTTTTCAGCCACATCTGGCCTTCT
TCAGCATCAGGCCTCTCTCAGCAGCATGAAGCCCCACAAGAGCACTAAGCTTGTGAGTGGCTTTCTCATG
GGACAGAGGTATCACAGGTGTGGTGAATGTGGGAAAGCCTTCACCCGCAAAGACACACTTGCTCGGCATC
AGAGAATCCACACTGGAGAAAGGCCTTATGAGTGTAACGAATGTGGGAAATTCTTCAGCCAAAGCTATGA
CCTCTTTAAACACCAGACAGTTCACACTGGAGAAAGGCCATACGAGTGCAGCGAATGTGGGAAATTCTTT
AGACAAATCTCCGGCCTGATTGAGCACAGGCGAGTTCACACGGGTGAAAGACTCTATCAGTGTGGCAAAT
GTGGGAAATTTTTTAGCAGTAAGTCTAATCTCATTCGACACCAGGAAGTTCACACAGGAGCCAGGCCTTA
TGTATGCAGCGAATGTGGGAAAGAGTTCAGTCGGAAACACACACTTGTTCTGCACCAACGAACTCACACT
GGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAGGCCTTTAGCCAAAGCTCCCACCTTAATGTACACT
GGAGAATTCACAGCAGTGATTATGAGTGTAGCAGATGTGGTAAAGCTTTCAGCTGCATCTCCAAACTCAT
TCAGCACCAGAAAGTTCACTCTGGAGAAAAGCCTTATGAGTGCAGCAAGTGCGGGAAAGCCTTCACTCAA
AGACCCAACCTCATCAGGCACTGGAAAGTCCACACTGGGGAAAGGCCTTATGTGTGTAGTGAGTGCGGGA
GAGAATTCATCCGGAAACAGACACTTGTTCTGCACCAGAGGGTTCATGCTGGAGAAAAGCTTTAA

Translation (534 aa):
MLSPVSRDASDALQGRKCLRPRSRRLPLPAAVRAHGPMAELTDSARGCVVFEDVFVYFSREEWELLDDAQ
RLLYHDVMLENFALLASLGIAFSRSRAVMKLERGEEPWVYDQVDMTSATEREAQRGLRPGCWHGVEDEEV
SSEQSIFVAGVSEVRTLMAELESHPCDICGPILKDTLHLAKYHGGKARQKPYLCGACGKQFWFSTDFDQH
QNQPNGGKLFPRKEGRDSVKSCRVHVPEKTLTCGKGRRDFSATSGLLQHQASLSSMKPHKSTKLVSGFLM
GQRYHRCGECGKAFTRKDTLARHQRIHTGERPYECNECGKFFSQSYDLFKHQTVHTGERPYECSECGKFF
RQISGLIEHRRVHTGERLYQCGKCGKFFSSKSNLIRHQEVHTGARPYVCSECGKEFSRKHTLVLHQRTHT
GERPYECSECGKAFSQSSHLNVHWRIHSSDYECSRCGKAFSCISKLIQHQKVHSGEKPYECSKCGKAFTQ
RPNLIRHWKVHTGERPYVCSECGREFIRKQTLVLHQRVHAGEKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH