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Report for CCDS28685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28685.1 Public Mus musculus 17 Gpank1 23 108 98 CCDS HistoryNCBI Gene:81845Re-query CCDS DB by CCDS ID:28685.1Re-query CCDS DB by GeneID:81845See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052167.8 ENSMUSP00000056646.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052167.8Link to Ensembl Protein Viewer:ENSMUSP00000056646.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000052167Re-query CCDS DB by Protein ID:ENSMUSP00000056646
Original member Current member NCBI NM_032460.2 NP_115849.2 Accepted alive Link to Nucleotide Sequence:NM_032460.2Link to Protein Sequence:NP_115849.2Re-query CCDS DB by Nucleotide ID:NM_032460Re-query CCDS DB by Protein ID:NP_115849Link to BLAST:NP_115849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115849.2 372 Q61858 372 100% 0 0

Chromosomal Locations for CCDS 28685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35122986 35123659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35124220 35124664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGTTGGATCGCTTGCTTGTCACATCCTTGCCTTGCCCAGTCTTCATTTTCTTGTTTCTCTCACAGGCA
TGTCTAGGCCATCCTTCATCGAATTTACCCCAGCGGCTGACTCCAGTGACCTCTGGAAGGATGGGCAGCA
GCAACCACAGCAGGAGAAAGCAGAGCCTGTCCTGGACGGGGCTGCTGCCCGGGCTTTCTATGAGGCTCTA
ATCGCAGATGACAGTAGTTCCTCTAAGCCCCAGAGAGCTGAACCTATGAGGGAGAGGAAGAAGAAGAGAA
GAAGAGTGACTAGGGAGCCTGCAGCAGCAGGAGTCCCCAGACAAGGAAGAGCACTTGAGGATGAAGACAG
GATGGCCCAGTGGATCCTGCTGGCAGCCCAGAATGGGGATCTGACAGAACTCCGGAGGCTGCTAGAACCC
CAAGAGGCAGGGGGAGCTGGAGGGAATATCAATGCTCGTGATGCCTTCTGGTGGACTCCCTTGATGTGTG
CTGCCCGAGCAGGCCAGGGCGCCGCTGTGCGCTATCTCCTGGGCCGAGGAGCTGCCTGGGTTGGAGTCTG
TGACCTGGGAGGCAGAGATGCTGCCCAGCTGGCTGAAGAAGCAGGCTTCCCTGAGGTAGCCCGTATGGTC
AGAGAGAGTCATGGAGAGACAAGGAGCCCTGAGAACCAGAACCGATCTACCCCCTCCTCGTCCCAGTTCT
GTGAGGACTGTGGTGCCCACTTTGAAGACTCCAACCACCACACATCTACTGCTCACCTGCTGTCACTGTC
CAGGAGACCCCAGCCCTCCAACCTTCCCCTTGGGGTGCCCACTTCCAGTCCTGGCTTCAGGCTACTGCTG
AGAGGTGGCTGGGAACCAGGAATGGGGCTAGGACCCCGGGGTGAAGGCCGTGCCAACCCTATCCCCACTA
TCCTCAAGAGGGACCAGGAAGGATTGGGTTATAGATCCCCACCCCAACCCCGAGTCACACACTTTGCAGC
GCGGGATACCCGGGCTGTGTCTGGGAGAGAGAGAGTCCCTCGAGTTGCCACACTGAGTCAGAGGGAGAAC
AGAAGGCAAGAAGAAAAGGGCAGAGCCTGGGAGCGAGATCTAAGACTGTACATGAACCTCGAGTTCTGA

Translation (372 aa):
MVGSLACHILALPSLHFLVSLTGMSRPSFIEFTPAADSSDLWKDGQQQPQQEKAEPVLDGAAARAFYEAL
IADDSSSSKPQRAEPMRERKKKRRRVTREPAAAGVPRQGRALEDEDRMAQWILLAAQNGDLTELRRLLEP
QEAGGAGGNINARDAFWWTPLMCAARAGQGAAVRYLLGRGAAWVGVCDLGGRDAAQLAEEAGFPEVARMV
RESHGETRSPENQNRSTPSSSQFCEDCGAHFEDSNHHTSTAHLLSLSRRPQPSNLPLGVPTSSPGFRLLL
RGGWEPGMGLGPRGEGRANPIPTILKRDQEGLGYRSPPQPRVTHFAARDTRAVSGRERVPRVATLSQREN
RRQEEKGRAWERDLRLYMNLEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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