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Report for CCDS23210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23210.1 Public Mus musculus 9 Cimap1c 23 108 98 CCDS HistoryNCBI Gene:382075Re-query CCDS DB by CCDS ID:23210.1Re-query CCDS DB by GeneID:382075See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055036.6 ENSMUSP00000060418.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055036.6Link to Ensembl Protein Viewer:ENSMUSP00000060418.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055036Re-query CCDS DB by Protein ID:ENSMUSP00000060418
Original member Current member NCBI NM_198673.2 NP_941075.1 Accepted alive Link to Nucleotide Sequence:NM_198673.2Link to Protein Sequence:NP_941075.1Re-query CCDS DB by Nucleotide ID:NM_198673Re-query CCDS DB by Protein ID:NP_941075Link to BLAST:NP_941075.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941075.1 275 Q810P2 275 100% 0 0

Chromosomal Locations for CCDS 23210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 56848810 56849291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56849954 56850067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56850740 56850850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 56851656 56851776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (828 nt):
ATGAAGCAGTCCAAGGGGTCCAGGAACTATGTGTTCTACGCACAGCACCCAGAGAAGGAGGAAGAGGTGC
CCTCATGGCATGAAATCAAGCAGACCCCTGTCATCATGGCCACAATCAAAGGTCCAGGGCCTGCCAAGTA
CCTCCGGTCATCCTGTACTGGCTATATAGCCCATGACATCTCCATGTTCCAGGAGCCAGCTTACAGTCTG
CATACACGGCACACTAAGAAACGGATCATAGACATAAACAGCCCCGGACCTTGCTATTTCTTGAATCCCA
AAGTAACTCGTTTTGGAATATCCACCTGCCCCCAGGTCCCCATGGAGGAGCGCATCTCCAATCCACGCAT
AAATTGCATGCCAGCCTCCTGCAAGTACAACCTTGAGAAGACTCGACCCTCTGGGGAACGTCAGCCTCCC
CAGTACACTTTTGGCTACCGGTGTCCATATAGAGTGATGGATCCCAACCCTGCTCCTAACCAGTACCAGC
TGCCAGTCACTCTGGGGACCAACATCCCTGTCTTCCGAGCTGCCCCTTCCTATAGTCTGGCTTCCACAAA
CAAGAATTGGTTCCACAAGGAGAATATAGCAGGAGGTCCCGGACCTGCTATGCATACCCGACCTGAGCCA
TCCGTCTACCAGAACCGCAGCCCTTTGTTTAGCATGGCCAAGCGCTTTGGCTGTCCTTTGGACCACACGC
ATCGGCCTGGCCCTGGCTCCCACGACATCCAGCCGGTCACTGTGCACAAACCCCGCATACCTGCCTTCAC
CATGGGCATCAAACATTCACCCCACTTGTGCCCACTGATTGTGGACATTTGTGACTGA

Translation (275 aa):
MKQSKGSRNYVFYAQHPEKEEEVPSWHEIKQTPVIMATIKGPGPAKYLRSSCTGYIAHDISMFQEPAYSL
HTRHTKKRIIDINSPGPCYFLNPKVTRFGISTCPQVPMEERISNPRINCMPASCKYNLEKTRPSGERQPP
QYTFGYRCPYRVMDPNPAPNQYQLPVTLGTNIPVFRAAPSYSLASTNKNWFHKENIAGGPGPAMHTRPEP
SVYQNRSPLFSMAKRFGCPLDHTHRPGPGSHDIQPVTVHKPRIPAFTMGIKHSPHLCPLIVDICD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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