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Report for CCDS25486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25486.1 Public Mus musculus 11 Ppy 23 108 98 CCDS HistoryNCBI Gene:19064Re-query CCDS DB by CCDS ID:25486.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25486.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017460.5 ENSMUSP00000017460.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017460.5Link to Ensembl Protein Viewer:ENSMUSP00000017460.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000017460Re-query CCDS DB by Protein ID:ENSMUSP00000017460
Original member Current member EBI ENSMUST00000170554.8 ENSMUSP00000126798.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170554.8Link to Ensembl Protein Viewer:ENSMUSP00000126798.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170554Re-query CCDS DB by Protein ID:ENSMUSP00000126798
Original member Current member NCBI NM_008918.2 NP_032944.1 Accepted alive Link to Nucleotide Sequence:NM_008918.2Link to Protein Sequence:NP_032944.1Re-query CCDS DB by Nucleotide ID:NM_008918Re-query CCDS DB by Protein ID:NP_032944Link to BLAST:NP_032944.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032944.1 100 P10601 100 100% 0 0

Chromosomal Locations for CCDS 25486.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102100172 102100283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102100521 102100711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (303 nt):
ATGGCCGTCGCATACTGCTGCCTCTCCCTGTTTCTCGTATCCACTTGGGTGGCTCTGCTGCTGCAGCCCC
TGCAGGGGACCTGGGGAGCCCCCCTGGAGCCAATGTACCCAGGCGACTATGCGACACCTGAGCAGATGGC
ACAATATGAAACTCAGCTCCGCAGATACATCAACACACTGACCAGGCCTAGGTATGGGAAGAGAGCCGAG
GAGGAGAACACAGGTGGACTTCCTGGAGTGCAGCTCTCCCCCTGCACCAGCCCCCCAGTTGGCTTGATTC
CCTGCTCTGCGCCCTGGAGCTGA

Translation (100 aa):
MAVAYCCLSLFLVSTWVALLLQPLQGTWGAPLEPMYPGDYATPEQMAQYETQLRRYINTLTRPRYGKRAE
EENTGGLPGVQLSPCTSPPVGLIPCSAPWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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