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Report for CCDS23826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23826.1 Public Mus musculus 10 Prep 23 108 98 CCDS HistoryNCBI Gene:19072Re-query CCDS DB by CCDS ID:23826.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23826.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099858.3 ENSMUSP00000097444.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099858.3Link to Ensembl Protein Viewer:ENSMUSP00000097444.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099858Re-query CCDS DB by Protein ID:ENSMUSP00000097444
Original member Current member NCBI NM_011156.3 NP_035286.1 Accepted alive Link to Nucleotide Sequence:NM_011156.3Link to Protein Sequence:NP_035286.1Re-query CCDS DB by Nucleotide ID:NM_011156Re-query CCDS DB by Protein ID:NP_035286Link to BLAST:NP_035286.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035286.1 710 Q9QUR6 710 100% 0 0

Chromosomal Locations for CCDS 23826.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 45067331 45067375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45072053 45072127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45090993 45091126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45092662 45092792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45094981 45095190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45097393 45097514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45107772 45107877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45115063 45115254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45120643 45120840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45125964 45126067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45147985 45148121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45150436 45150530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45153055 45153186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45155516 45155672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45158232 45158526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2133 nt):
ATGCTGTCCTTCCAGTACCCCGACGTGTACCGCGACGAGACCTCCGTGCAGGAGTATCATGGACATAAAA
TTTGTGACCCGTATTCTTGGCTTGAAGACCCAGACAGCGAGCAGACTAAGGCTTTCGTGGAGGCACAAAA
CAAGATTACTGTGCCATTTCTTGAGCAATGTCCAATCAGAGGTTTATACAAGGAGAGAATGACTGAGCTG
TACGACTACCCCAAGTACAGCTGCCACTTCAAGAAAGGAAAGCGGTACTTTTATTTTTACAATACAGGTT
TGCAGAACCAACGCGTGTTATATGTGCAAGACTCCTTAGAGGGGGAGGCCAGAGTGTTCCTGGACCCCAA
CACACTGTCGGATGATGGTACAGTGGCACTCCGAGGTTATGCCTTCAGTGAAGATGGCGAATACTTTGCC
TATGGTCTGAGCGCCAGCGGCTCCGACTGGGTGACGATCAAGTTCATGAAGGTCGATGGTGCCAAAGAGC
TCCCGGATGTGCTGGAGAGAGTCAAGTTCACCTGCATGGCCTGGACGCATGACGGGAAGGGAATGTTCTA
TAACTCATACCCGCAGCAGGACGGGAAGAGCGATGGCACAGAGACATCCACCAATCTCCACCAAAAGCTC
TGCTACCACGTCTTGGGGACGGATCAGTCAGAAGATATTTTGTGTGCTGAGTTCCCCGATGAGCCTAAAT
GGATGGGAGGAGCTGAGCTATCCGACGATGGCCGGTACGTCTTGTTATCCATCTGGGAGGGATGTGATCC
AGTAAACCGACTGTGGTACTGTGACCTCCAGCAAGAACCCAATGGTATCACCGGAATCCTGAAGTGGGTA
AAACTGATAGACAACTTTGAAGGAGAATACGACTACGTAACCAACGAGGGCACAGTGTTCACATTCAAGA
CGAACCGCAATTCTCCCAATTATCGGCTGATCAATATCGACTTCACGGACCCTGACGAGTCCAAGTGGAA
AGTGCTCGTACCGGAGCACGAGAAGGATGTCTTAGAATGGGTGGCTTGTGTCAGGTCCAACTTCCTGGTC
TTGTGCTACCTCCATGACGTGAAGAACATTCTACAGCTTCACGACCTGACGACTGGTGCTCTCCTCAAGA
CCTTCCCCCTGGATGTGGGCAGCGTGGTGGGCTACAGTGGGCGCAAGAAGGACTCTGAGATCTTCTACCA
GTTCACATCCTTCCTATCTCCAGGTGTCATTTACCACTGCGATCTTACCAAAGAGGAACTGGAGCCCATG
GTTTTCCGAGAGGTGACGGTGAAGGGAATCGATGCTGCTGATTACCAGACAATCCAGATTTTCTACCCTA
GCAAGGATGGCACCAAGATTCCCATGTTTATTGTGCATAAAAAAGGCATAAAGCTGGATGGCTCACACCC
TGCTTTCTTATATGGCTACGGGGGCTTCAACATCTCCATTACACCCAACTACAGCGTGTCCAGGCTCATT
TTTGTGAGACATATGGGCGGCGTCCTCGCGGTGGCTAACATCAGAGGCGGCGGTGAATACGGAGAGACGT
GGCACAAAGGTGGTATCTTGGCCAACAAACAGAACTGTTTTGATGACTTCCAGTGTGCTGCTGAGTACCT
CATCAAGGAAGGTTACACATCTCCCAAGAGGCTCACGATCAACGGAGGCTCCAACGGCGGCCTCTTAGTA
GCTGCTTGCGCAAATCAGCGTCCAGACCTCTTCGGCTGTGTTATTGCCCAGGTTGGAGTGATGGACATGT
TGAAGTTCCACAAATTTACTATCGGCCATGCATGGACCACTGATTACGGGTGCTCCGACACTAAACAACA
CTTTGAATGGCTTCTCAAATACTCGCCACTACACAATGTGAAGCTTCCGGAGGCAGACGACATCCAGTAC
CCGTCCATGCTTCTCCTCACGGCTGACCACGACGACCGCGTGGTCCCGCTGCACTCACTGAAGTTCATTG
CCACCCTTCAGTACATCGTGGGCCGCAGCCGGAAGCAGAGCAACCCCCTGCTCATCCACGTGGACACCAA
GGCCGGCCACGGGGCCGGGAAACCCACCGCCAAAGTGATAGAAGAAGTCTCGGATATGTTTGCGTTCATA
GCACGGTGCCTGAACATCGAGTGGATCCAGTAA

Translation (710 aa):
MLSFQYPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTEL
YDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDDGTVALRGYAFSEDGEYFA
YGLSASGSDWVTIKFMKVDGAKELPDVLERVKFTCMAWTHDGKGMFYNSYPQQDGKSDGTETSTNLHQKL
CYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIWEGCDPVNRLWYCDLQQEPNGITGILKWV
KLIDNFEGEYDYVTNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLV
LCYLHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLTKEELEPM
VFREVTVKGIDAADYQTIQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLI
FVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLV
AACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAWTTDYGCSDTKQHFEWLLKYSPLHNVKLPEADDIQY
PSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFI
ARCLNIEWIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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