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Report for CCDS16954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16954.1 Public Mus musculus 2 Procr 23 108 98 CCDS HistoryNCBI Gene:19124Re-query CCDS DB by CCDS ID:16954.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029140.11 ENSMUSP00000029140.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029140.11Link to Ensembl Protein Viewer:ENSMUSP00000029140.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029140Re-query CCDS DB by Protein ID:ENSMUSP00000029140
Original member NCBI NM_011171.2 NP_035301.2 Updated not alive Link to Nucleotide Sequence:NM_011171.2Link to Protein Sequence:NP_035301.2Re-query CCDS DB by Nucleotide ID:NM_011171Re-query CCDS DB by Protein ID:NP_035301
Current member NCBI NM_011171.3 NP_035301.2 Accepted alive Link to Nucleotide Sequence:NM_011171.3Link to Protein Sequence:NP_035301.2Re-query CCDS DB by Nucleotide ID:NM_011171Re-query CCDS DB by Protein ID:NP_035301Link to BLAST:NP_035301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035301.2 242 Q64695 242 100% 0 0

Chromosomal Locations for CCDS 16954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 155751398 155751464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155753345 155753602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155754240 155754527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 155754769 155754884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGTTGACGAAGTTTCTGCCGCTACTGCTGCTGCTGCTGCCTGGCTGCGCCCTTTGTAACTCCGATGGCT
CCCAAAGCCTGCATATGCTCCAGATCTCCTATTTCCAAGACAACCATCATGTGAGGCATCAGGGCAACGC
CTCTCTGGGAAAACTCCTGACACACACGCTGGAAGGCCCCAGCCAAAACGTCACCATCCTCCAGCTACAG
CCCTGGCAGGATCCGGAGAGCTGGGAGCGCACAGAGAGTGGCCTGCAGATCTATCTGACCCAGTTCGAAA
GCCTGGTGAAGCTGGTATATCGCGAGCGCAAGGAGAACGTGTTCTTTCCTCTCACTGTTAGCTGCTCCCT
GGGCTGCGAGCTGCCGGAGGAGGAGGAGGAGGGCTCTGAACCCCATGTCTTCTTCGATGTGGCCGTGAAT
GGAAGCGCTTTTGTAAGTTTCCGGCCAAAGACTGCCGTGTGGGTGTCAGGCTCCCAGGAGCCCTCCAAAG
CAGCCAACTTCACCCTGAAGCAGCTCAATGCCTACAACCGGACTCGGTATGAACTGCAGGAATTTCTTCA
GGACACTTGTGTGGAGTTCCTGGAGAACCACATCACCACGCAAAACATGAAAGGGAGCCAAACAGGTCGC
TCTTACACATCACTGGTCCTGGGCATCCTGATGGGCTGTTTCATAATCGCTGGTGTGGCCGTGGGCATCT
TCATGTGCACAAGTGGACGGCGTTGCTAA

Translation (242 aa):
MLTKFLPLLLLLLPGCALCNSDGSQSLHMLQISYFQDNHHVRHQGNASLGKLLTHTLEGPSQNVTILQLQ
PWQDPESWERTESGLQIYLTQFESLVKLVYRERKENVFFPLTVSCSLGCELPEEEEEGSEPHVFFDVAVN
GSAFVSFRPKTAVWVSGSQEPSKAANFTLKQLNAYNRTRYELQEFLQDTCVEFLENHITTQNMKGSQTGR
SYTSLVLGILMGCFIIAGVAVGIFMCTSGRRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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